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  5. Kfl00285_0080

Kfl00285_0080 (kfl00285_0080_v1.1)


Aliases : kfl00285_0080_v1.1

Description : (at3g19840 : 342.0) Binds the carboxyl-terminal domain (CTD) of the largest subunit of RNA polymerase II and functions as a scaffold for RNA processing machineries.; pre-mRNA-processing protein 40C (PRP40C); CONTAINS InterPro DOMAIN/s: FF domain (InterPro:IPR002713), WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: pre-mRNA-processing protein 40A (TAIR:AT1G44910.2); Has 7513 Blast hits to 5748 proteins in 436 species: Archae - 33; Bacteria - 336; Metazoa - 3654; Fungi - 967; Plants - 481; Viruses - 7; Other Eukaryotes - 2035 (source: NCBI BLink). & (reliability: 684.0) & (original description: no original description)


Gene families : OG_42_0005521 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005521_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00285_0080
Cluster HCCA clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
Glyma.11G103100 No alias pre-mRNA-processing protein 40C 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000012 single strand break repair IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
InterPro domains Description Start Stop
IPR002713 FF_domain 429 477
IPR002713 FF_domain 364 410
IPR002713 FF_domain 498 544
IPR001202 WW_dom 219 244
No external refs found!