Description : 60S ribosomal protein L12 (AHRD V3.3 *** K7WTX4_SOLTU)
Gene families : OG_42_0001717 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001717_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Solanum release: Solyc06g075180 | |
Cluster | HCCA clusters: Cluster_26 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
227409 | No alias | Ribosomal protein L11 family protein | 0.08 | Orthogroups_2024-Update | |
A4A49_09340 | No alias | 60s ribosomal protein l12 | 0.07 | Orthogroups_2024-Update | |
A4A49_19100 | No alias | 60s ribosomal protein l12 | 0.05 | Orthogroups_2024-Update | |
A4A49_58419 | No alias | 60s ribosomal protein l12 | 0.1 | Orthogroups_2024-Update | |
AC196489.3_FG002 | No alias | Ribosomal protein L11 family protein | 0.05 | Orthogroups_2024-Update | |
At3g53430 | No alias | 60S ribosomal Protein L12-like... | 0.04 | Orthogroups_2024-Update | |
At5g60670 | No alias | 60S ribosomal protein L12-3... | 0.03 | Orthogroups_2024-Update | |
Bradi3g52460 | No alias | Ribosomal protein L11 family protein | 0.05 | Orthogroups_2024-Update | |
Bradi5g20330 | No alias | Ribosomal protein L11 family protein | 0.05 | Orthogroups_2024-Update | |
Brara.C01863.1 | No alias | component *(uL11) of large ribosomal-subunit (LSU) proteome | 0.1 | Orthogroups_2024-Update | |
Brara.D00531.1 | No alias | component *(uL11) of large ribosomal-subunit (LSU) proteome | 0.08 | Orthogroups_2024-Update | |
Brara.D02258.1 | No alias | component *(uL11) of large ribosomal-subunit (LSU) proteome | 0.12 | Orthogroups_2024-Update | |
Brara.G01587.1 | No alias | component *(uL11) of large ribosomal-subunit (LSU) proteome | 0.07 | Orthogroups_2024-Update | |
Brara.I03633.1 | No alias | component *(uL11) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
Brara.J01420.1 | No alias | component *(uL11) of large ribosomal-subunit (LSU) proteome | 0.07 | Orthogroups_2024-Update | |
Cre12.g528750 | No alias | Ribosomal protein L11 family protein | 0.05 | Orthogroups_2024-Update | |
GRMZM2G054201 | No alias | Ribosomal protein L11 family protein | 0.04 | Orthogroups_2024-Update | |
GRMZM2G121075 | No alias | Ribosomal protein L11 family protein | 0.08 | Orthogroups_2024-Update | |
GRMZM2G438814 | No alias | Ribosomal protein L11 family protein | 0.08 | Orthogroups_2024-Update | |
Glyma.10G053100 | No alias | Ribosomal protein L11 family protein | 0.07 | Orthogroups_2024-Update | |
Glyma.11G146300 | No alias | Ribosomal protein L11 family protein | 0.06 | Orthogroups_2024-Update | |
Glyma.12G075500 | No alias | Ribosomal protein L11 family protein | 0.05 | Orthogroups_2024-Update | |
Glyma.13G140100 | No alias | Ribosomal protein L11 family protein | 0.03 | Orthogroups_2024-Update | |
HORVU2Hr1G102610.1 | No alias | component *(uL11) of large ribosomal-subunit (LSU) proteome | 0.06 | Orthogroups_2024-Update | |
HORVU6Hr1G067870.1 | No alias | component *(uL11) of large ribosomal-subunit (LSU) proteome | 0.08 | Orthogroups_2024-Update | |
Kfl00125_0170 | kfl00125_0170_v1.1 | (at2g37190 : 245.0) Ribosomal protein L11 family... | 0.07 | Orthogroups_2024-Update | |
LOC_Os04g50990 | No alias | L11 domain containing ribosomal protein, putative, expressed | 0.04 | Orthogroups_2024-Update | |
Mp3g02020.1 | No alias | component RPL12 of LSU proteome component | 0.07 | Orthogroups_2024-Update | |
Pp1s104_128V6 | No alias | 60s ribosomal protein l12 | 0.13 | Orthogroups_2024-Update | |
Pp1s14_191V6 | No alias | 60s ribosomal protein l12 | 0.03 | Orthogroups_2024-Update | |
Pp1s242_7V6 | No alias | 60s ribosomal protein l12 | 0.1 | Orthogroups_2024-Update | |
Pp1s280_55V6 | No alias | 60s ribosomal protein l12 | 0.02 | Orthogroups_2024-Update | |
Pp1s280_63V6 | No alias | 60s ribosomal protein l12 | 0.02 | Orthogroups_2024-Update | |
Pp1s78_212V6 | No alias | 60s ribosomal protein l12 | 0.1 | Orthogroups_2024-Update | |
Seita.1G284700.1 | No alias | component *(uL11) of large ribosomal-subunit (LSU) proteome | 0.07 | Orthogroups_2024-Update | |
Seita.7G078800.1 | No alias | component *(uL11) of large ribosomal-subunit (LSU) proteome | 0.13 | Orthogroups_2024-Update | |
Seita.7G222200.1 | No alias | component *(uL11) of large ribosomal-subunit (LSU) proteome | 0.09 | Orthogroups_2024-Update | |
Sobic.004G271400.1 | No alias | component *(uL11) of large ribosomal-subunit (LSU) proteome | 0.1 | Orthogroups_2024-Update | |
Sobic.006G057200.1 | No alias | component *(uL11) of large ribosomal-subunit (LSU) proteome | 0.12 | Orthogroups_2024-Update | |
Sobic.006G201500.1 | No alias | component *(uL11) of large ribosomal-subunit (LSU) proteome | 0.14 | Orthogroups_2024-Update | |
Sopen06g031590 | No alias | Ribosomal protein L11, N-terminal domain | 0.17 | Orthogroups_2024-Update | |
Sopen11g025410 | No alias | Ribosomal protein L11, N-terminal domain | 0.14 | Orthogroups_2024-Update | |
Sopen11g028160 | No alias | Ribosomal protein L11, N-terminal domain | 0.06 | Orthogroups_2024-Update | |
evm.model.contig_2343.1 | No alias | (at5g60670 : 215.0) Ribosomal protein L11 family... | 0.13 | Orthogroups_2024-Update | |
evm.model.tig00001339.27 | No alias | (at5g60670 : 218.0) Ribosomal protein L11 family... | 0.06 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | InterProScan predictions |
CC | GO:0005840 | ribosome | IEA | InterProScan predictions |
BP | GO:0006412 | translation | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000049 | tRNA binding | IEP | Predicted GO |
MF | GO:0000774 | adenyl-nucleotide exchange factor activity | IEP | Predicted GO |
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0004550 | nucleoside diphosphate kinase activity | IEP | Predicted GO |
CC | GO:0005622 | intracellular | IEP | Predicted GO |
CC | GO:0005739 | mitochondrion | IEP | Predicted GO |
CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Predicted GO |
BP | GO:0006183 | GTP biosynthetic process | IEP | Predicted GO |
BP | GO:0006213 | pyrimidine nucleoside metabolic process | IEP | Predicted GO |
BP | GO:0006220 | pyrimidine nucleotide metabolic process | IEP | Predicted GO |
BP | GO:0006221 | pyrimidine nucleotide biosynthetic process | IEP | Predicted GO |
BP | GO:0006228 | UTP biosynthetic process | IEP | Predicted GO |
BP | GO:0006241 | CTP biosynthetic process | IEP | Predicted GO |
BP | GO:0006417 | regulation of translation | IEP | Predicted GO |
BP | GO:0006448 | regulation of translational elongation | IEP | Predicted GO |
BP | GO:0006449 | regulation of translational termination | IEP | Predicted GO |
BP | GO:0006452 | translational frameshifting | IEP | Predicted GO |
BP | GO:0006457 | protein folding | IEP | Predicted GO |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | Predicted GO |
BP | GO:0009147 | pyrimidine nucleoside triphosphate metabolic process | IEP | Predicted GO |
BP | GO:0009148 | pyrimidine nucleoside triphosphate biosynthetic process | IEP | Predicted GO |
BP | GO:0009163 | nucleoside biosynthetic process | IEP | Predicted GO |
BP | GO:0009208 | pyrimidine ribonucleoside triphosphate metabolic process | IEP | Predicted GO |
BP | GO:0009209 | pyrimidine ribonucleoside triphosphate biosynthetic process | IEP | Predicted GO |
BP | GO:0009218 | pyrimidine ribonucleotide metabolic process | IEP | Predicted GO |
BP | GO:0009220 | pyrimidine ribonucleotide biosynthetic process | IEP | Predicted GO |
BP | GO:0009891 | positive regulation of biosynthetic process | IEP | Predicted GO |
BP | GO:0009893 | positive regulation of metabolic process | IEP | Predicted GO |
BP | GO:0010557 | positive regulation of macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:0010604 | positive regulation of macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0010608 | posttranscriptional regulation of gene expression | IEP | Predicted GO |
BP | GO:0010628 | positive regulation of gene expression | IEP | Predicted GO |
CC | GO:0015934 | large ribosomal subunit | IEP | Predicted GO |
MF | GO:0016776 | phosphotransferase activity, phosphate group as acceptor | IEP | Predicted GO |
MF | GO:0019205 | nucleobase-containing compound kinase activity | IEP | Predicted GO |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
BP | GO:0031325 | positive regulation of cellular metabolic process | IEP | Predicted GO |
BP | GO:0031328 | positive regulation of cellular biosynthetic process | IEP | Predicted GO |
BP | GO:0032268 | regulation of cellular protein metabolic process | IEP | Predicted GO |
BP | GO:0032270 | positive regulation of cellular protein metabolic process | IEP | Predicted GO |
BP | GO:0034248 | regulation of cellular amide metabolic process | IEP | Predicted GO |
BP | GO:0034250 | positive regulation of cellular amide metabolic process | IEP | Predicted GO |
BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
BP | GO:0042451 | purine nucleoside biosynthetic process | IEP | Predicted GO |
BP | GO:0042455 | ribonucleoside biosynthetic process | IEP | Predicted GO |
MF | GO:0042802 | identical protein binding | IEP | Predicted GO |
MF | GO:0042803 | protein homodimerization activity | IEP | Predicted GO |
MF | GO:0043021 | ribonucleoprotein complex binding | IEP | Predicted GO |
MF | GO:0043022 | ribosome binding | IEP | Predicted GO |
BP | GO:0043243 | positive regulation of protein complex disassembly | IEP | Predicted GO |
BP | GO:0043244 | regulation of protein complex disassembly | IEP | Predicted GO |
CC | GO:0044391 | ribosomal subunit | IEP | Predicted GO |
BP | GO:0045727 | positive regulation of translation | IEP | Predicted GO |
BP | GO:0045901 | positive regulation of translational elongation | IEP | Predicted GO |
BP | GO:0045905 | positive regulation of translational termination | IEP | Predicted GO |
BP | GO:0046036 | CTP metabolic process | IEP | Predicted GO |
BP | GO:0046039 | GTP metabolic process | IEP | Predicted GO |
BP | GO:0046051 | UTP metabolic process | IEP | Predicted GO |
BP | GO:0046129 | purine ribonucleoside biosynthetic process | IEP | Predicted GO |
BP | GO:0046131 | pyrimidine ribonucleoside metabolic process | IEP | Predicted GO |
BP | GO:0046132 | pyrimidine ribonucleoside biosynthetic process | IEP | Predicted GO |
BP | GO:0046134 | pyrimidine nucleoside biosynthetic process | IEP | Predicted GO |
MF | GO:0051082 | unfolded protein binding | IEP | Predicted GO |
MF | GO:0051087 | chaperone binding | IEP | Predicted GO |
BP | GO:0051130 | positive regulation of cellular component organization | IEP | Predicted GO |
BP | GO:0051173 | positive regulation of nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0051247 | positive regulation of protein metabolic process | IEP | Predicted GO |
MF | GO:0060590 | ATPase regulator activity | IEP | Predicted GO |
BP | GO:1901070 | guanosine-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:1901659 | glycosyl compound biosynthetic process | IEP | Predicted GO |
No external refs found! |