Description : Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9HP52_POPTR)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Solanum release: Solyc06g076900 | |
Cluster | HCCA clusters: Cluster_176 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
123450 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
171135 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.01 | Orthogroups_2024-Update | |
74842 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.01 | Orthogroups_2024-Update | |
At2g36730 | No alias | Pentatricopeptide repeat-containing protein At2g36730... | 0.03 | Orthogroups_2024-Update | |
At2g41080 | No alias | Pentatricopeptide repeat-containing protein At2g41080... | 0.02 | Orthogroups_2024-Update | |
At3g25970 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | Orthogroups_2024-Update | |
At5g03800 | No alias | Glycosyltransferase (Fragment)... | 0.03 | Orthogroups_2024-Update | |
Bradi2g32290 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi2g42710 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi3g32220 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi3g51740 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi5g14000 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Brara.A03095.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Glyma.02G087100 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.04G129100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Glyma.05G078900 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.18G287500 | No alias | mitochondrial editing factor 22 | 0.03 | Orthogroups_2024-Update | |
Glyma.20G154600 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.02 | Orthogroups_2024-Update | |
HORVU0Hr1G001760.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
HORVU5Hr1G101000.3 | No alias | RNA editing factor *(DEK36) | 0.03 | Orthogroups_2024-Update | |
HORVU5Hr1G113330.1 | No alias | Unknown function | 0.01 | Orthogroups_2024-Update | |
HORVU7Hr1G111860.1 | No alias | Unknown function | 0.01 | Orthogroups_2024-Update | |
LOC_Os02g06880 | No alias | EMB2758, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os04g14130 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os04g41120 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
LOC_Os09g15800 | No alias | tetratricopeptide-like helical, putative, expressed | 0.04 | Orthogroups_2024-Update | |
LOC_Os12g36620 | No alias | pentatricopeptide, putative, expressed | 0.04 | Orthogroups_2024-Update | |
MA_9360929g0010 | No alias | (at4g13650 : 669.0) Pentatricopeptide repeat (PPR)... | 0.02 | Orthogroups_2024-Update | |
MA_95261g0010 | No alias | (at1g11290 : 556.0) Pentatricopeptide Repeat Protein... | 0.02 | Orthogroups_2024-Update | |
PSME_00001719-RA | No alias | (at4g18750 : 701.0) Encodes a pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00001944-RA | No alias | (at1g11290 : 488.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
PSME_00011574-RA | No alias | (at1g16480 : 646.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00013280-RA | No alias | (at4g33170 : 410.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00036565-RA | No alias | (at4g18750 : 575.0) Encodes a pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00050145-RA | No alias | (at4g13650 : 719.0) Pentatricopeptide repeat (PPR)... | 0.02 | Orthogroups_2024-Update | |
Potri.001G075800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.004G047800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.005G019400 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.014G029500 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Seita.2G031700.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Seita.2G047600.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.2G177900.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.008G100400.3 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sopen02g025050 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen06g033290 | No alias | PPR repeat | 0.04 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | Predicted GO |
CC | GO:0000786 | nucleosome | IEP | Predicted GO |
MF | GO:0003824 | catalytic activity | IEP | Predicted GO |
MF | GO:0004329 | formate-tetrahydrofolate ligase activity | IEP | Predicted GO |
MF | GO:0004356 | glutamate-ammonia ligase activity | IEP | Predicted GO |
MF | GO:0005524 | ATP binding | IEP | Predicted GO |
BP | GO:0006760 | folic acid-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0007155 | cell adhesion | IEP | Predicted GO |
MF | GO:0009055 | electron transfer activity | IEP | Predicted GO |
BP | GO:0009396 | folic acid-containing compound biosynthetic process | IEP | Predicted GO |
MF | GO:0015035 | protein disulfide oxidoreductase activity | IEP | Predicted GO |
MF | GO:0015036 | disulfide oxidoreductase activity | IEP | Predicted GO |
MF | GO:0016211 | ammonia ligase activity | IEP | Predicted GO |
MF | GO:0016667 | oxidoreductase activity, acting on a sulfur group of donors | IEP | Predicted GO |
MF | GO:0016743 | carboxyl- or carbamoyltransferase activity | IEP | Predicted GO |
MF | GO:0016836 | hydro-lyase activity | IEP | Predicted GO |
MF | GO:0016874 | ligase activity | IEP | Predicted GO |
MF | GO:0016879 | ligase activity, forming carbon-nitrogen bonds | IEP | Predicted GO |
MF | GO:0016880 | acid-ammonia (or amide) ligase activity | IEP | Predicted GO |
MF | GO:0016987 | sigma factor activity | IEP | Predicted GO |
MF | GO:0017076 | purine nucleotide binding | IEP | Predicted GO |
BP | GO:0019725 | cellular homeostasis | IEP | Predicted GO |
BP | GO:0022610 | biological adhesion | IEP | Predicted GO |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Predicted GO |
MF | GO:0032553 | ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Predicted GO |
CC | GO:0032993 | protein-DNA complex | IEP | Predicted GO |
MF | GO:0034061 | DNA polymerase activity | IEP | Predicted GO |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
MF | GO:0036094 | small molecule binding | IEP | Predicted GO |
BP | GO:0042398 | cellular modified amino acid biosynthetic process | IEP | Predicted GO |
BP | GO:0042558 | pteridine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0042559 | pteridine-containing compound biosynthetic process | IEP | Predicted GO |
MF | GO:0043168 | anion binding | IEP | Predicted GO |
CC | GO:0044815 | DNA packaging complex | IEP | Predicted GO |
BP | GO:0045454 | cell redox homeostasis | IEP | Predicted GO |
MF | GO:0052855 | ADP-dependent NAD(P)H-hydrate dehydratase activity | IEP | Predicted GO |
MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Predicted GO |
MF | GO:0140096 | catalytic activity, acting on a protein | IEP | Predicted GO |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Predicted GO |
MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR032867 | DYW_dom | 609 | 734 |
IPR002885 | Pentatricopeptide_repeat | 436 | 481 |
IPR002885 | Pentatricopeptide_repeat | 202 | 250 |
IPR002885 | Pentatricopeptide_repeat | 334 | 382 |
IPR002885 | Pentatricopeptide_repeat | 410 | 430 |
IPR002885 | Pentatricopeptide_repeat | 577 | 605 |
IPR002885 | Pentatricopeptide_repeat | 305 | 333 |
IPR002885 | Pentatricopeptide_repeat | 101 | 130 |
IPR002885 | Pentatricopeptide_repeat | 277 | 304 |
No external refs found! |