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Description : LOW QUALITY:RNA-binding KH domain-containing protein (AHRD V3.3 *** AT3G13230.2)
Gene families : OG_42_0005246 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005246_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Solanum release: Solyc06g082620 | |
| Cluster | HCCA clusters: Cluster_116 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Sobic.003G321700.1 | No alias | pre-40S ribosomal-subunit proteome nuclear export factor *(Dim2) | 0.02 | Orthogroups_2024-Update | |
| Sopen06g034020 | No alias | KH domain | 0.04 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000159 | protein phosphatase type 2A complex | IEP | Predicted GO |
| BP | GO:0000390 | spliceosomal complex disassembly | IEP | Predicted GO |
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0005488 | binding | IEP | Predicted GO |
| MF | GO:0005515 | protein binding | IEP | Predicted GO |
| CC | GO:0005681 | spliceosomal complex | IEP | Predicted GO |
| CC | GO:0005684 | U2-type spliceosomal complex | IEP | Predicted GO |
| CC | GO:0005789 | endoplasmic reticulum membrane | IEP | Predicted GO |
| BP | GO:0006396 | RNA processing | IEP | Predicted GO |
| BP | GO:0007165 | signal transduction | IEP | Predicted GO |
| CC | GO:0008287 | protein serine/threonine phosphatase complex | IEP | Predicted GO |
| MF | GO:0008536 | Ran GTPase binding | IEP | Predicted GO |
| MF | GO:0008641 | ubiquitin-like modifier activating enzyme activity | IEP | Predicted GO |
| MF | GO:0016877 | ligase activity, forming carbon-sulfur bonds | IEP | Predicted GO |
| MF | GO:0019208 | phosphatase regulator activity | IEP | Predicted GO |
| MF | GO:0019888 | protein phosphatase regulator activity | IEP | Predicted GO |
| BP | GO:0022411 | cellular component disassembly | IEP | Predicted GO |
| MF | GO:0030234 | enzyme regulator activity | IEP | Predicted GO |
| BP | GO:0031123 | RNA 3'-end processing | IEP | Predicted GO |
| BP | GO:0031124 | mRNA 3'-end processing | IEP | Predicted GO |
| BP | GO:0032984 | protein-containing complex disassembly | IEP | Predicted GO |
| BP | GO:0032988 | ribonucleoprotein complex disassembly | IEP | Predicted GO |
| CC | GO:0071008 | U2-type post-mRNA release spliceosomal complex | IEP | Predicted GO |
| CC | GO:0071014 | post-mRNA release spliceosomal complex | IEP | Predicted GO |
| BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | Predicted GO |
| MF | GO:0098772 | molecular function regulator | IEP | Predicted GO |
| CC | GO:1902494 | catalytic complex | IEP | Predicted GO |
| CC | GO:1903293 | phosphatase complex | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |