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  5. Solyc06g083300

Solyc06g083300


Description : Nuclear transport factor 2 family protein with RNA binding domain, putative isoform 2 (AHRD V3.3 *** A0A061DMC0_THECC)


Gene families : OG_42_0000547 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000547_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Solanum release: Solyc06g083300
Cluster HCCA clusters: Cluster_281

Target Alias Description ECC score Gene Family Method Actions
Glyma.05G020200 No alias Nuclear transport factor 2 (NTF2) family protein with... 0.03 Orthogroups_2024-Update
Potri.015G058700 No alias Nuclear transport factor 2 (NTF2) family protein with... 0.04 Orthogroups_2024-Update
Pp1s6_129V6 No alias rna binding 0.02 Orthogroups_2024-Update
Seita.1G165100.1 No alias mRNA endoribonuclease *(G3BP) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
BP GO:0006810 transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000390 spliceosomal complex disassembly IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
CC GO:0005684 U2-type spliceosomal complex IEP Predicted GO
BP GO:0008272 sulfate transport IEP Predicted GO
MF GO:0015116 sulfate transmembrane transporter activity IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
BP GO:0022411 cellular component disassembly IEP Predicted GO
BP GO:0032984 protein-containing complex disassembly IEP Predicted GO
BP GO:0032988 ribonucleoprotein complex disassembly IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
CC GO:0071008 U2-type post-mRNA release spliceosomal complex IEP Predicted GO
CC GO:0071014 post-mRNA release spliceosomal complex IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
BP GO:0072348 sulfur compound transport IEP Predicted GO
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002075 NTF2 211 327
IPR000504 RRM_dom 521 579
No external refs found!