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  5. Kfl00869_0020

Kfl00869_0020 (kfl00869_0020_v1.1)


Aliases : kfl00869_0020_v1.1

Description : (at5g04600 : 147.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT3G47120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 294.0) & (original description: no original description)


Gene families : OG_42_0004683 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004683_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Klebsormidium release: Kfl00869_0020
Cluster HCCA clusters: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
Brara.B00148.1 No alias pre-60S ribosomal subunit assembly factor *(NOP15) 0.03 Orthogroups_2024-Update
Brara.J02725.1 No alias pre-60S ribosomal subunit assembly factor *(NOP15) 0.08 Orthogroups_2024-Update
Pp1s198_53V6 No alias ribosomal biogenesis protein gar2 0.03 Orthogroups_2024-Update
evm.model.contig_496.11 No alias (at5g04600 : 93.2) RNA-binding (RRM/RBD/RNP motifs)... 0.03 Orthogroups_2024-Update
evm.model.tig00000137.5 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 110 179
No external refs found!