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  5. Solyc06g084020

Solyc06g084020


Description : histone H1


Gene families : OG_42_0000689 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000689_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc06g084020
Cluster HCCA clusters: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
Bradi1g55260 No alias winged-helix DNA-binding transcription factor family protein 0.03 Orthogroups_2024-Update
Bradi5g19000 No alias histone H1-3 0.03 Orthogroups_2024-Update
GRMZM2G080274 No alias histone H1-3 0.03 Orthogroups_2024-Update
GRMZM2G121221 No alias winged-helix DNA-binding transcription factor family protein 0.03 Orthogroups_2024-Update
GRMZM2G401308 No alias winged-helix DNA-binding transcription factor family protein 0.05 Orthogroups_2024-Update
HORVU2Hr1G094400.5 No alias linker histone *(H1) 0.04 Orthogroups_2024-Update
HORVU5Hr1G106550.2 No alias linker histone *(H1) 0.04 Orthogroups_2024-Update
HORVU5Hr1G106610.2 No alias linker histone *(H1) 0.03 Orthogroups_2024-Update
HORVU5Hr1G106730.2 No alias linker histone *(H1) 0.03 Orthogroups_2024-Update
HORVU7Hr1G012850.1 No alias linker histone *(H1) 0.03 Orthogroups_2024-Update
MA_500183g0010 No alias (original description: no original description) 0.03 Orthogroups_2024-Update
MA_5243726g0010 No alias (p27806|h1_wheat : 91.3) Histone H1 - Triticum aestivum... 0.03 Orthogroups_2024-Update
MA_6409g0010 No alias (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00018261-RA No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
PSME_00053828-RA No alias (original description: no original description) 0.02 Orthogroups_2024-Update
PSME_00054433-RA No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
PSME_00055368-RA No alias (original description: no original description) 0.02 Orthogroups_2024-Update
Seita.4G020700.1 No alias linker histone *(H1) 0.01 Orthogroups_2024-Update
Solyc09g083380 No alias Histone H1 (AHRD V3.3 *-* H1_MAIZE) 0.03 Orthogroups_2024-Update
Sopen09g032300 No alias linker histone H1 and H5 family 0.05 Orthogroups_2024-Update
evm.model.contig_2062.24 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006334 nucleosome assembly IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
CC GO:0000152 nuclear ubiquitin ligase complex IEP Predicted GO
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
BP GO:0000226 microtubule cytoskeleton organization IEP Predicted GO
CC GO:0000922 spindle pole IEP Predicted GO
MF GO:0003689 DNA clamp loader activity IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
CC GO:0005663 DNA replication factor C complex IEP Predicted GO
CC GO:0005680 anaphase-promoting complex IEP Predicted GO
CC GO:0005815 microtubule organizing center IEP Predicted GO
BP GO:0006353 DNA-templated transcription, termination IEP Predicted GO
BP GO:0007020 microtubule nucleation IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
MF GO:0008318 protein prenyltransferase activity IEP Predicted GO
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Predicted GO
MF GO:0015399 primary active transmembrane transporter activity IEP Predicted GO
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
BP GO:0018342 protein prenylation IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predicted GO
BP GO:0032957 inositol trisphosphate metabolic process IEP Predicted GO
MF GO:0033170 protein-DNA loading ATPase activity IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
BP GO:0043647 inositol phosphate metabolic process IEP Predicted GO
MF GO:0047325 inositol tetrakisphosphate 1-kinase activity IEP Predicted GO
MF GO:0051765 inositol tetrakisphosphate kinase activity IEP Predicted GO
MF GO:0051766 inositol trisphosphate kinase activity IEP Predicted GO
MF GO:0052725 inositol-1,3,4-trisphosphate 6-kinase activity IEP Predicted GO
MF GO:0052726 inositol-1,3,4-trisphosphate 5-kinase activity IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
BP GO:0097354 prenylation IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 57 111
No external refs found!