1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc07g005950

Solyc07g005950


Description : Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9SQY5_RICCO)


Gene families : OG_42_0007361 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007361_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g005950
Cluster HCCA clusters: Cluster_152

Target Alias Description ECC score Gene Family Method Actions
LOC_Os09g25550 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
MA_187850g0010 No alias (at4g30825 : 404.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
Potri.006G005100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Sobic.007G087100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sopen07g002080 No alias PPR repeat family 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004417 hydroxyethylthiazole kinase activity IEP Predicted GO
CC GO:0005743 mitochondrial inner membrane IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006772 thiamine metabolic process IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009228 thiamine biosynthetic process IEP Predicted GO
MF GO:0016987 sigma factor activity IEP Predicted GO
CC GO:0019866 organelle inner membrane IEP Predicted GO
BP GO:0022904 respiratory electron transport chain IEP Predicted GO
BP GO:0030258 lipid modification IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042723 thiamine-containing compound metabolic process IEP Predicted GO
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
BP GO:0046834 lipid phosphorylation IEP Predicted GO
BP GO:0046854 phosphatidylinositol phosphorylation IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 561 584
IPR002885 Pentatricopeptide_repeat 633 658
IPR002885 Pentatricopeptide_repeat 247 272
IPR002885 Pentatricopeptide_repeat 664 691
IPR002885 Pentatricopeptide_repeat 352 378
IPR002885 Pentatricopeptide_repeat 804 834
IPR002885 Pentatricopeptide_repeat 388 416
IPR002885 Pentatricopeptide_repeat 283 312
IPR002885 Pentatricopeptide_repeat 736 779
IPR002885 Pentatricopeptide_repeat 418 464
IPR002885 Pentatricopeptide_repeat 840 881
IPR002885 Pentatricopeptide_repeat 907 955
No external refs found!