LOC_Os01g05470

Description : transcription factor X1, putative, expressed

Gene families : OG_42_0000478 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000478_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os01g05470
Cluster	HCCA clusters: cluster_0027

Target	Alias	Description	ECC score	Gene Family Method	Actions
GRMZM2G100898	No alias	XH/XS domain-containing protein	0.03	Orthogroups_2024-Update
Sobic.003G072500.1	No alias	regulatory protein of DNA methylation pathway *(IDN/IDP)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016458	gene silencing	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031047	gene silencing by RNA	IEA	InterProScan predictions
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003713	transcription coactivator activity	IEP	Predicted GO
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Predicted GO
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	Predicted GO
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Predicted GO
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR005380	XS_domain	179	291
IPR005379	Uncharacterised_XH	567	696
IPR005381	Znf-XS_domain	75	118

External Links

No external refs found!