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  5. LOC_Os01g05630

LOC_Os01g05630


Description : Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed


Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g05630
Cluster HCCA clusters: cluster_0105

Target Alias Description ECC score Gene Family Method Actions
At1g07790 No alias Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4] 0.02 Orthogroups_2024-Update
At2g37470 No alias Histone H2B.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUS0] 0.03 Orthogroups_2024-Update
At3g45980 No alias Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V9F6] 0.03 Orthogroups_2024-Update
Cre12.g504700 No alias Histone superfamily protein 0.01 Orthogroups_2024-Update
Glyma.10G198500 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Glyma.20G191600 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G056530.1 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
HORVU1Hr1G078530.3 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
HORVU7Hr1G110090.1 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
LOC_Os09g39730 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.02 Orthogroups_2024-Update
MA_10428006g0010 No alias (at3g45980 : 145.0) Encodes a histone 2B (H2B) protein.... 0.02 Orthogroups_2024-Update
MA_10436516g0020 No alias (at3g45980 : 175.0) Encodes a histone 2B (H2B) protein.... 0.02 Orthogroups_2024-Update
Mp6g07010.1 No alias histone (H2B) 0.02 Orthogroups_2024-Update
PSME_00025825-RA No alias (at5g22880 : 173.0) Encodes a histone 2B (H2B) protein.... 0.03 Orthogroups_2024-Update
PSME_00037687-RA No alias (at3g45980 : 174.0) Encodes a histone 2B (H2B) protein.... 0.02 Orthogroups_2024-Update
Potri.008G030550 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Potri.009G028001 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Seita.5G107600.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Sobic.002G138000.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Sobic.003G350100.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Solyc02g038690 No alias Histone H2B (AHRD V3.3 *** K4B5W3_SOLLC) 0.02 Orthogroups_2024-Update
Solyc03g071620 No alias Histone H2B (AHRD V3.3 *** K4BHJ2_SOLLC) 0.02 Orthogroups_2024-Update
Solyc06g005390 No alias Histone H2B (AHRD V3.3 *** K4C323_SOLLC) 0.03 Orthogroups_2024-Update
Solyc11g007920 No alias Histone H2B (AHRD V3.3 *** K4D553_SOLLC) 0.02 Orthogroups_2024-Update
Solyc12g013510 No alias Histone H2B (AHRD V3.3 *** K4DCN6_SOLLC) 0.04 Orthogroups_2024-Update
Sopen03g019890 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update
Sopen05g033890 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update
evm.model.contig_533.3 No alias (p16868|h2b4_volca : 127.0) Histone H2B.4 (H2B-IV) -... 0.02 Orthogroups_2024-Update
evm.model.tig00000944.18 No alias (p16868|h2b4_volca : 122.0) Histone H2B.4 (H2B-IV) -... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 6 129
No external refs found!