1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc07g008490

Solyc07g008490


Description : Poly(RC)-binding protein, putative (AHRD V3.3 *-* B9SPR0_RICCO)


Gene families : OG_42_0000691 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000691_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g008490
Cluster HCCA clusters: Cluster_288

Target Alias Description ECC score Gene Family Method Actions
PSME_00044829-RA No alias (at3g04610 : 131.0) flowering locus KH domain (FLK);... 0.02 Orthogroups_2024-Update
Sopen07g004420 No alias KH domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP Predicted GO
BP GO:0000726 non-recombinational repair IEP Predicted GO
MF GO:0004003 ATP-dependent DNA helicase activity IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Predicted GO
BP GO:0006333 chromatin assembly or disassembly IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
BP GO:0009894 regulation of catabolic process IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
BP GO:0042176 regulation of protein catabolic process IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0051246 regulation of protein metabolic process IEP Predicted GO
BP GO:0051259 protein complex oligomerization IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
CC GO:1905368 peptidase complex IEP Predicted GO
CC GO:1905369 endopeptidase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 105 169
No external refs found!