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  5. Solyc07g008760

Solyc07g008760


Description : Tetratricopeptide repeat-containing protein (AHRD V3.3 *** D7LWY8_ARALL)


Gene families : OG_42_0006035 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006035_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g008760
Cluster HCCA clusters: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G504906 No alias Protein prenylyltransferase superfamily protein 0.02 Orthogroups_2024-Update
Glyma.04G204500 No alias Protein prenylyltransferase superfamily protein 0.03 Orthogroups_2024-Update
Kfl00061_0100 kfl00061_0100_v1.... (at5g17270 : 343.0) Protein prenylyltransferase... 0.02 Orthogroups_2024-Update
Potri.004G080800 No alias Protein prenylyltransferase superfamily protein 0.04 Orthogroups_2024-Update
Seita.2G124700.1 No alias Unknown function 0.06 Orthogroups_2024-Update
evm.model.tig00000448.24 No alias (at5g17270 : 181.0) Protein prenylyltransferase... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006528 asparagine metabolic process IEP Predicted GO
BP GO:0006529 asparagine biosynthetic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR019734 TPR_repeat 660 691
IPR013105 TPR_2 625 658
No external refs found!