1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os01g39540

LOC_Os01g39540


Description : retrotransposon, putative, centromere-specific


Gene families : OG_42_0000242 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000242_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g39540
Cluster HCCA clusters: cluster_0115

Target Alias Description ECC score Gene Family Method Actions
230231 No alias zinc transporter 4 precursor 0.02 Orthogroups_2024-Update
Brara.A01066.1 No alias iron/zinc/manganese/cobalt cation transporter *(IRT) &... 0.02 Orthogroups_2024-Update
Glyma.15G262800 No alias zinc transporter 1 precursor 0.01 Orthogroups_2024-Update
HORVU2Hr1G025400.1 No alias metal cation transporter *(ZIP) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!