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  5. LOC_Os01g41650

LOC_Os01g41650


Description : pentatricopeptide, putative, expressed


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g41650
Cluster HCCA clusters: cluster_0119

Target Alias Description ECC score Gene Family Method Actions
134463 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
Bradi1g22990 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G087100 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
HORVU1Hr1G082860.1 No alias Unknown function 0.02 Orthogroups_2024-Update
MA_385322g0010 No alias (at1g08070 : 385.0) Encodes a chloroplast RNA editing... 0.02 Orthogroups_2024-Update
MA_525914g0010 No alias (at1g11290 : 644.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
MA_668740g0020 No alias (at3g13770 : 627.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
MA_67032g0010 No alias (at3g12770 : 625.0) Encodes a pentatricopeptide repeat... 0.02 Orthogroups_2024-Update
PSME_00006211-RA No alias (at3g46790 : 145.0) Encodes a member of a PCMP (plant... 0.04 Orthogroups_2024-Update
PSME_00046485-RA No alias (at4g18750 : 683.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00057248-RA No alias (at1g11290 : 733.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
Potri.018G035900 No alias mitochondrial editing factor 21 0.03 Orthogroups_2024-Update
Solyc03g119950 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update
Sopen11g024580 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003714 transcription corepressor activity IEP Predicted GO
MF GO:0004197 cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 629 676
IPR002885 Pentatricopeptide_repeat 326 367
IPR002885 Pentatricopeptide_repeat 603 624
IPR002885 Pentatricopeptide_repeat 228 257
IPR002885 Pentatricopeptide_repeat 431 460
IPR002885 Pentatricopeptide_repeat 505 529
IPR002885 Pentatricopeptide_repeat 704 727
IPR002885 Pentatricopeptide_repeat 531 559
IPR002885 Pentatricopeptide_repeat 90 121
IPR002885 Pentatricopeptide_repeat 125 171
No external refs found!