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  5. LOC_Os01g54610

LOC_Os01g54610


Description : retrotransposon protein, putative, unclassified


Gene families : OG_42_0000058 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000058_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g54610
Cluster HCCA clusters: cluster_0024

Target Alias Description ECC score Gene Family Method Actions
Bradi2g45983 No alias RNA-directed DNA polymerase (reverse... 0.02 Orthogroups_2024-Update
Bradi3g11433 No alias Function unknown 0.02 Orthogroups_2024-Update
Bradi5g03062 No alias Function unknown 0.02 Orthogroups_2024-Update
GRMZM2G062271 No alias Function unknown 0.02 Orthogroups_2024-Update
HORVU5Hr1G018010.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G026000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G143550.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003713 transcription coactivator activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
InterPro domains Description Start Stop
IPR026960 RVT-Znf 43 127
No external refs found!