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  5. LOC_Os01g58780

LOC_Os01g58780


Description : zinc finger, C3HC4 type domain containing protein, expressed


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g58780
Cluster HCCA clusters: cluster_0010

Target Alias Description ECC score Gene Family Method Actions
A4A49_40802 No alias e3 ubiquitin-protein ligase rduf2 0.03 Orthogroups_2024-Update
HORVU6Hr1G080320.4 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os02g49550 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g26420 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os11g04680 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os11g04690 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g04450 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_9328282g0010 No alias (at5g01980 : 161.0) RING/U-box superfamily protein;... 0.04 Orthogroups_2024-Update
Pp1s161_109V6 No alias No description available 0.02 Orthogroups_2024-Update
Seita.3G157000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.8G172700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.8G172800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G371300.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Solyc01g009000 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT3G56580.3) 0.03 Orthogroups_2024-Update
Solyc01g016410 No alias RING/U-box superfamily protein (AHRD V3.3 *-* AT5G08139.1) 0.02 Orthogroups_2024-Update
Sopen09g029310 No alias Ring finger domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0005048 signal sequence binding IEP Predicted GO
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Predicted GO
BP GO:0006605 protein targeting IEP Predicted GO
BP GO:0006612 protein targeting to membrane IEP Predicted GO
BP GO:0006613 cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006820 anion transport IEP Predicted GO
BP GO:0008272 sulfate transport IEP Predicted GO
MF GO:0008312 7S RNA binding IEP Predicted GO
MF GO:0008509 anion transmembrane transporter activity IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Predicted GO
MF GO:0015116 sulfate transmembrane transporter activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
BP GO:0015698 inorganic anion transport IEP Predicted GO
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
MF GO:0042277 peptide binding IEP Predicted GO
BP GO:0045047 protein targeting to ER IEP Predicted GO
CC GO:0048500 signal recognition particle IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0070972 protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0072348 sulfur compound transport IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0072657 protein localization to membrane IEP Predicted GO
BP GO:0090150 establishment of protein localization to membrane IEP Predicted GO
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 191 233
IPR039525 RNF126-like_zinc-ribbon 6 36
No external refs found!