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  5. LOC_Os01g67950

LOC_Os01g67950


Description : ubiquitin family protein, putative, expressed


Gene families : OG_42_0000402 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000402_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g67950
Cluster HCCA clusters: cluster_0076

Target Alias Description ECC score Gene Family Method Actions
99632 No alias BCL-2-associated athanogene 4 0.02 Orthogroups_2024-Update
Bradi3g42060 No alias BCL-2-associated athanogene 2 0.02 Orthogroups_2024-Update
Brara.B01527.1 No alias nucleotide exchange factor *(BAG) 0.03 Orthogroups_2024-Update
Brara.B03788.1 No alias nucleotide exchange factor *(BAG) 0.02 Orthogroups_2024-Update
Cre12.g544900 No alias ubiquitin-specific protease 6 0.01 Orthogroups_2024-Update
GRMZM2G029863 No alias BCL-2-associated athanogene 3 0.02 Orthogroups_2024-Update
Glyma.19G054400 No alias Ubiquitin-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.19G080300 No alias Ubiquitin-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU2Hr1G083680.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU3Hr1G081400.3 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os02g38410 No alias ubiquitin family protein, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00028806-RA No alias (at5g52060 : 226.0) A member of Arabidopsis BAG... 0.01 Orthogroups_2024-Update
PSME_00055705-RA No alias (at5g52060 : 85.5) A member of Arabidopsis BAG... 0.03 Orthogroups_2024-Update
Seita.5G420300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.003G394400.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
MF GO:0005102 signaling receptor binding IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
MF GO:0008083 growth factor activity IEP Predicted GO
BP GO:0008283 cell proliferation IEP Predicted GO
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
MF GO:0030545 receptor regulator activity IEP Predicted GO
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Predicted GO
MF GO:0048018 receptor ligand activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 85 142
No external refs found!