LOC_Os01g70270

Description : auxin response factor, putative, expressed

Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os01g70270
Cluster	HCCA clusters: cluster_0031

Target	Alias	Description	ECC score	Gene Family Method
AC207656.3_FG002	No alias	auxin response factor 16	0.02	Orthogroups_2024-Update
At1g34410	No alias	Putative auxin response factor 21...	0.03	Orthogroups_2024-Update
Bradi5g10950	No alias	auxin response factor 1	0.04	Orthogroups_2024-Update
Bradi5g25157	No alias	Transcriptional factor B3 family protein /...	0.02	Orthogroups_2024-Update
Brara.D00084.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.H02379.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.02	Orthogroups_2024-Update
Brara.I00250.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
GRMZM2G081406	No alias	auxin response factor 16	0.05	Orthogroups_2024-Update
GRMZM2G179121	No alias	auxin response factor 16	0.03	Orthogroups_2024-Update
Glyma.07G130400	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Glyma.08G027800	No alias	Transcriptional factor B3 family protein /...	0.02	Orthogroups_2024-Update
Glyma.11G145500	No alias	auxin response factor 10	0.02	Orthogroups_2024-Update
Glyma.12G076200	No alias	auxin response factor 10	0.03	Orthogroups_2024-Update
Glyma.15G078800	No alias	Transcriptional factor B3 family protein /...	0.02	Orthogroups_2024-Update
LOC_Os07g08540	No alias	auxin response factor 20, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os08g40900	No alias	auxin response factor, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os11g32110	No alias	auxin response factor, putative, expressed	0.02	Orthogroups_2024-Update
MA_10432349g0010	No alias	(at5g62000 : 394.0) Encodes an auxin response factor....	0.04	Orthogroups_2024-Update
Mp4g11820.1	No alias	transcription factor (ARF)	0.02	Orthogroups_2024-Update
PSME_00050564-RA	No alias	(at2g28350 : 502.0) Involved in root cap cell...	0.03	Orthogroups_2024-Update
Potri.002G207050	No alias	auxin response factor 2	0.03	Orthogroups_2024-Update
Potri.011G091900	No alias	auxin response factor 6	0.03	Orthogroups_2024-Update
Seita.3G020000.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Seita.8G135700.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Solyc08g008380	No alias	Auxin Response Factor 9B	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	InterProScan predictions
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004356	glutamate-ammonia ligase activity	IEP	Predicted GO
MF	GO:0004435	phosphatidylinositol phospholipase C activity	IEP	Predicted GO
MF	GO:0004620	phospholipase activity	IEP	Predicted GO
MF	GO:0004629	phospholipase C activity	IEP	Predicted GO
BP	GO:0006541	glutamine metabolic process	IEP	Predicted GO
BP	GO:0006542	glutamine biosynthetic process	IEP	Predicted GO
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Predicted GO
BP	GO:0008652	cellular amino acid biosynthetic process	IEP	Predicted GO
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	Predicted GO
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	Predicted GO
CC	GO:0016021	integral component of membrane	IEP	Predicted GO
MF	GO:0016211	ammonia ligase activity	IEP	Predicted GO
MF	GO:0016298	lipase activity	IEP	Predicted GO
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Predicted GO
MF	GO:0016880	acid-ammonia (or amide) ligase activity	IEP	Predicted GO
CC	GO:0031224	intrinsic component of membrane	IEP	Predicted GO
BP	GO:0035556	intracellular signal transduction	IEP	Predicted GO
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEP	Predicted GO
MF	GO:0043492	ATPase activity, coupled to movement of substances	IEP	Predicted GO
CC	GO:0044425	membrane part	IEP	Predicted GO
BP	GO:0055085	transmembrane transport	IEP	Predicted GO
BP	GO:1901605	alpha-amino acid metabolic process	IEP	Predicted GO
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	129	230
IPR033389	AUX/IAA_dom	734	777
IPR033389	AUX/IAA_dom	673	728
IPR010525	Auxin_resp	255	336

External Links

No external refs found!

LOC_Os01g70270

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation