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  5. Solyc07g025210

Solyc07g025210


Description : Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A061FBT4_THECC)


Gene families : OG_42_0007272 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007272_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g025210
Cluster HCCA clusters: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
Bradi3g48510 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Brara.F01383.1 No alias component *(mS77) of small mitoribosomal-subunit proteome 0.07 Orthogroups_2024-Update
Glyma.17G251300 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
HORVU6Hr1G056180.4 No alias component *(mS77) of small mitoribosomal-subunit proteome 0.03 Orthogroups_2024-Update
Seita.1G229700.1 No alias component *(mS77) of small mitoribosomal-subunit proteome 0.03 Orthogroups_2024-Update
Sobic.004G212100.1 No alias component *(mS77) of small mitoribosomal-subunit proteome 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004813 alanine-tRNA ligase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006419 alanyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043085 positive regulation of catalytic activity IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044093 positive regulation of molecular function IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
BP GO:0050790 regulation of catalytic activity IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
BP GO:0065009 regulation of molecular function IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!