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  5. Solyc01g080190

Solyc01g080190


Description : Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9RSR9_RICCO)


Gene families : OG_42_0010026 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0010026_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g080190
Cluster HCCA clusters: Cluster_176

Target Alias Description ECC score Gene Family Method Actions
Potri.010G029900 No alias mitochondrial editing factor 18 0.04 Orthogroups_2024-Update
Sopen01g031970 No alias PPR repeat family 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
BP GO:0006743 ubiquinone metabolic process IEP Predicted GO
BP GO:0006744 ubiquinone biosynthetic process IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0016854 racemase and epimerase activity IEP Predicted GO
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Predicted GO
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Predicted GO
BP GO:0042180 cellular ketone metabolic process IEP Predicted GO
BP GO:0042181 ketone biosynthetic process IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:1901661 quinone metabolic process IEP Predicted GO
BP GO:1901663 quinone biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 154 200
IPR002885 Pentatricopeptide_repeat 521 569
IPR002885 Pentatricopeptide_repeat 418 462
IPR002885 Pentatricopeptide_repeat 494 518
IPR002885 Pentatricopeptide_repeat 257 286
IPR002885 Pentatricopeptide_repeat 390 417
IPR002885 Pentatricopeptide_repeat 229 256
IPR002885 Pentatricopeptide_repeat 288 314
IPR002885 Pentatricopeptide_repeat 96 117
IPR002885 Pentatricopeptide_repeat 588 619
IPR002885 Pentatricopeptide_repeat 121 151
No external refs found!