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  5. LOC_Os02g03930

LOC_Os02g03930


Description : expressed protein


Gene families : OG_42_0008941 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008941_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os02g03930
Cluster HCCA clusters: cluster_0006

Target Alias Description ECC score Gene Family Method Actions
Glyma.07G188700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
HORVU6Hr1G017080.17 No alias Unknown function 0.03 Orthogroups_2024-Update
PSME_00021959-RA No alias (at2g17140 : 607.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004506 squalene monooxygenase activity IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 284 313
IPR002885 Pentatricopeptide_repeat 455 487
IPR002885 Pentatricopeptide_repeat 514 545
IPR002885 Pentatricopeptide_repeat 552 599
IPR002885 Pentatricopeptide_repeat 148 193
IPR002885 Pentatricopeptide_repeat 389 436
IPR002885 Pentatricopeptide_repeat 622 671
IPR002885 Pentatricopeptide_repeat 321 368
IPR002885 Pentatricopeptide_repeat 211 259
No external refs found!