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  5. LOC_Os02g50960

LOC_Os02g50960


Description : auxin efflux carrier component, putative, expressed


Gene families : OG_42_0000235 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000235_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os02g50960
Cluster HCCA clusters: cluster_0034

Target Alias Description ECC score Gene Family Method Actions
A4A49_02382 No alias auxin efflux carrier component 3 0.02 Orthogroups_2024-Update
A4A49_06506 No alias auxin efflux carrier component 3 0.02 Orthogroups_2024-Update
A4A49_08912 No alias auxin efflux carrier component 5 0.03 Orthogroups_2024-Update
A4A49_27140 No alias auxin efflux carrier component 2 0.02 Orthogroups_2024-Update
A4A49_35848 No alias hypothetical protein 0.04 Orthogroups_2024-Update
Brara.B01244.1 No alias auxin transporter *(PIN) & auxin efflux transporter *(PIN) 0.02 Orthogroups_2024-Update
Brara.G02422.1 No alias auxin transporter *(PIN) & auxin efflux transporter *(PIN) 0.04 Orthogroups_2024-Update
Glyma.05G109800 No alias Auxin efflux carrier family protein 0.03 Orthogroups_2024-Update
Glyma.09G251600 No alias Auxin efflux carrier family protein 0.02 Orthogroups_2024-Update
Glyma.17G057300 No alias Auxin efflux carrier family protein 0.03 Orthogroups_2024-Update
Mp3g21660.1 No alias auxin transporter (PIN). auxin efflux transporter (PIN) 0.02 Orthogroups_2024-Update
PSME_00036388-RA No alias (at1g70940 : 405.0) A regulator of auxin efflux and... 0.02 Orthogroups_2024-Update
Potri.015G038700 No alias Auxin efflux carrier family protein 0.02 Orthogroups_2024-Update
Potri.016G035300 No alias Auxin efflux carrier family protein 0.02 Orthogroups_2024-Update
Seita.5G241500.1 No alias auxin efflux transporter *(PIN) & auxin transporter *(PIN) 0.03 Orthogroups_2024-Update
Solyc01g068410 No alias SlPIN5 0.02 Orthogroups_2024-Update
Sopen04g002780 No alias Membrane transport protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP Predicted GO
CC GO:0000439 transcription factor TFIIH core complex IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
CC GO:0005795 Golgi stack IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
CC GO:0031984 organelle subcompartment IEP Predicted GO
BP GO:0043085 positive regulation of catalytic activity IEP Predicted GO
BP GO:0044093 positive regulation of molecular function IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0050790 regulation of catalytic activity IEP Predicted GO
MF GO:0051011 microtubule minus-end binding IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
BP GO:0065009 regulation of molecular function IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
CC GO:0098791 Golgi subcompartment IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
InterPro domains Description Start Stop
IPR004776 Mem_trans 9 590
No external refs found!