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  5. LOC_Os02g58330

LOC_Os02g58330


Description : expressed protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os02g58330
Cluster HCCA clusters: cluster_0105

Target Alias Description ECC score Gene Family Method Actions
Bradi1g47160 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
Bradi2g06450 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g45250 No alias mitochondrial RNAediting factor 1 0.04 Orthogroups_2024-Update
Brara.B03211.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU1Hr1G090780.5 No alias RNA editing factor *(ECB2/VAC1) 0.03 Orthogroups_2024-Update
LOC_Os01g10090 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os01g10800 No alias pentatricopeptide, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os04g14450 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os08g25280 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00001719-RA No alias (at4g18750 : 701.0) Encodes a pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00001944-RA No alias (at1g11290 : 488.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00021884-RA No alias (at2g27610 : 613.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00036639-RA No alias (at1g11290 : 691.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00048581-RA No alias (at4g02750 : 590.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
Pp1s169_110V6 No alias T12J13.14; pentatricopeptide (PPR) repeat-containing... 0.02 Orthogroups_2024-Update
Sobic.007G201400.1 No alias RNA editing factor *(DOT4) 0.02 Orthogroups_2024-Update
Solyc11g040060 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 287 333
IPR002885 Pentatricopeptide_repeat 187 214
IPR002885 Pentatricopeptide_repeat 156 181
IPR002885 Pentatricopeptide_repeat 361 386
No external refs found!