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  5. LOC_Os03g01530

LOC_Os03g01530


Description : tubulin/FtsZ domain containing protein, putative, expressed


Gene families : OG_42_0000212 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000212_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g01530
Cluster HCCA clusters: cluster_0105

Target Alias Description ECC score Gene Family Method Actions
164404 No alias tubulin beta chain 2 0.02 Orthogroups_2024-Update
A4A49_21669 No alias tubulin beta-2 chain 0.03 Orthogroups_2024-Update
A4A49_61063 No alias tubulin beta-8 chain 0.03 Orthogroups_2024-Update
At4g20890 No alias Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UU99] 0.03 Orthogroups_2024-Update
Brara.A01134.1 No alias beta-Tubulin component *(TUB) of alpha-beta-Tubulin heterodimer 0.02 Orthogroups_2024-Update
Brara.D01772.1 No alias beta-Tubulin component *(TUB) of alpha-beta-Tubulin heterodimer 0.02 Orthogroups_2024-Update
GRMZM2G108766 No alias tubulin beta 8 0.02 Orthogroups_2024-Update
Glyma.06G024100 No alias tubulin beta-1 chain 0.02 Orthogroups_2024-Update
Glyma.20G159200 No alias tubulin beta 8 0.02 Orthogroups_2024-Update
PSME_00018352-RA No alias (q6vaf7|tbb5_goshi : 413.0) Tubulin beta-5 chain (Beta-5... 0.02 Orthogroups_2024-Update
Seita.4G265500.1 No alias beta-Tubulin component *(TUB) of alpha-beta-Tubulin heterodimer 0.02 Orthogroups_2024-Update
Sobic.001G540900.1 No alias beta-Tubulin component *(TUB) of alpha-beta-Tubulin heterodimer 0.02 Orthogroups_2024-Update
Sopen04g035100 No alias Tubulin/FtsZ family, GTPase domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0004003 ATP-dependent DNA helicase activity IEP Predicted GO
CC GO:0005849 mRNA cleavage factor complex IEP Predicted GO
BP GO:0006378 mRNA polyadenylation IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008374 O-acyltransferase activity IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR018316 Tubulin/FtsZ_2-layer-sand-dom 261 382
IPR003008 Tubulin_FtsZ_GTPase 3 211
No external refs found!