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  5. LOC_Os03g03490

LOC_Os03g03490


Description : expressed protein


Gene families : OG_42_0000224 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000224_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g03490
Cluster HCCA clusters: cluster_0058

Target Alias Description ECC score Gene Family Method Actions
Bradi5g08750 No alias SBP (S-ribonuclease binding protein) family protein 0.04 Orthogroups_2024-Update
Brara.K00315.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G165063 No alias SBP (S-ribonuclease binding protein) family protein 0.02 Orthogroups_2024-Update
LOC_Os11g34080 No alias expressed protein 0.03 Orthogroups_2024-Update
Pp1s3_307V6 No alias F20B24.9; expressed protein [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update
Sobic.001G141600.1 No alias E3 ubiquitin ligase *(BRG) 0.04 Orthogroups_2024-Update
Sobic.005G142300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G063100.3 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.006G063200.2 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Predicted GO
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Predicted GO
CC GO:0000930 gamma-tubulin complex IEP Predicted GO
CC GO:0000931 gamma-tubulin large complex IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003714 transcription corepressor activity IEP Predicted GO
MF GO:0004556 alpha-amylase activity IEP Predicted GO
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Predicted GO
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0005347 ATP transmembrane transporter activity IEP Predicted GO
MF GO:0005471 ATP:ADP antiporter activity IEP Predicted GO
CC GO:0005758 mitochondrial intermembrane space IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006825 copper ion transport IEP Predicted GO
BP GO:0006862 nucleotide transport IEP Predicted GO
CC GO:0008274 gamma-tubulin ring complex IEP Predicted GO
MF GO:0008514 organic anion transmembrane transporter activity IEP Predicted GO
MF GO:0015215 nucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0015217 ADP transmembrane transporter activity IEP Predicted GO
MF GO:0015301 anion:anion antiporter activity IEP Predicted GO
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Predicted GO
BP GO:0015748 organophosphate ester transport IEP Predicted GO
BP GO:0015931 nucleobase-containing compound transport IEP Predicted GO
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016530 metallochaperone activity IEP Predicted GO
MF GO:0016531 copper chaperone activity IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
BP GO:0031503 protein-containing complex localization IEP Predicted GO
CC GO:0031970 organelle envelope lumen IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
BP GO:0033566 gamma-tubulin complex localization IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
BP GO:0034629 cellular protein-containing complex localization IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044450 microtubule organizing center part IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
MF GO:0099516 ion antiporter activity IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!