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  5. LOC_Os03g05720

LOC_Os03g05720


Description : WD domain, G-beta repeat domain containing protein, expressed


Gene families : OG_42_0005593 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005593_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g05720
Cluster HCCA clusters: cluster_0054

Target Alias Description ECC score Gene Family Method Actions
99969 No alias transducin family protein / WD-40 repeat family protein 0.03 Orthogroups_2024-Update
Brara.A01985.1 No alias SSU processome assembly factor *(UTP12) 0.03 Orthogroups_2024-Update
Cre10.g438700 No alias transducin family protein / WD-40 repeat family protein 0.01 Orthogroups_2024-Update
PSME_00009688-RA No alias (at3g21540 : 120.0) transducin family protein / WD-40... 0.02 Orthogroups_2024-Update
Sopen10g012250 No alias WD domain, G-beta repeat 0.02 Orthogroups_2024-Update
evm.model.tig00021721.26 No alias (at3g21540 : 312.0) transducin family protein / WD-40... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 66 96
IPR001680 WD40_repeat 185 221
IPR001680 WD40_repeat 651 688
IPR001680 WD40_repeat 571 603
IPR001680 WD40_repeat 610 646
IPR001680 WD40_repeat 390 421
IPR001680 WD40_repeat 146 180
IPR001680 WD40_repeat 100 138
IPR007148 SSU_processome_Utp12 790 891
No external refs found!