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  5. LOC_Os03g06240

LOC_Os03g06240


Description : YT521-B-like family domain containing protein, expressed


Gene families : OG_42_0000396 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000396_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g06240
Cluster HCCA clusters: cluster_0106

Target Alias Description ECC score Gene Family Method Actions
At1g48110 No alias evolutionarily conserved C-terminal region 7... 0.03 Orthogroups_2024-Update
Bradi1g74560 No alias evolutionarily conserved C-terminal region 2 0.03 Orthogroups_2024-Update
Brara.E02771.1 No alias methylation reader *(ECT) 0.03 Orthogroups_2024-Update
Glyma.08G226100 No alias evolutionarily conserved C-terminal region 5 0.04 Orthogroups_2024-Update
Glyma.15G136400 No alias evolutionarily conserved C-terminal region 7 0.03 Orthogroups_2024-Update
PSME_00000116-RA No alias (at3g13060 : 277.0) evolutionarily conserved C-terminal... 0.05 Orthogroups_2024-Update
PSME_00011787-RA No alias (at1g48110 : 346.0) evolutionarily conserved C-terminal... 0.02 Orthogroups_2024-Update
PSME_00014883-RA No alias (at3g13460 : 331.0) Physically interacts with CIPK1.;... 0.03 Orthogroups_2024-Update
PSME_00030394-RA No alias (at3g13060 : 178.0) evolutionarily conserved C-terminal... 0.02 Orthogroups_2024-Update
Seita.9G534000.1 No alias methylation reader *(ECT) 0.03 Orthogroups_2024-Update
Sobic.001G090500.1 No alias methylation reader *(ECT) 0.02 Orthogroups_2024-Update
Sobic.007G172700.1 No alias methylation reader *(ECT) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016151 nickel cation binding IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007275 YTH_domain 466 603
No external refs found!