LOC_Os03g08440


Description : ribosomal protein S2, putative, expressed


Gene families : OG_42_0001668 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001668_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g08440
Cluster HCCA clusters: cluster_0085

Target Alias Description ECC score Gene Family Method Actions
36118 No alias 40s ribosomal protein SA 0.03 Orthogroups_2024-Update
At1g72370 No alias 40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:A0A178WNA1] 0.02 Orthogroups_2024-Update
Bradi1g20880 No alias 40s ribosomal protein SA B 0.04 Orthogroups_2024-Update
Bradi1g23780 No alias 40s ribosomal protein SA B 0.05 Orthogroups_2024-Update
Bradi1g60310 No alias 40s ribosomal protein SA B 0.05 Orthogroups_2024-Update
Bradi1g72480 No alias 40s ribosomal protein SA B 0.02 Orthogroups_2024-Update
Brara.B02024.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Brara.G02358.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Brara.G03124.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Glyma.07G043800 No alias 40s ribosomal protein SA B 0.03 Orthogroups_2024-Update
Glyma.08G159800 No alias 40s ribosomal protein SA B 0.04 Orthogroups_2024-Update
Glyma.15G267100 No alias 40s ribosomal protein SA B 0.04 Orthogroups_2024-Update
Glyma.16G012200 No alias 40s ribosomal protein SA B 0.04 Orthogroups_2024-Update
HORVU2Hr1G030880.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Mp2g26290.1 No alias component RPSa of SSU proteome 0.03 Orthogroups_2024-Update
Potri.003G071200 No alias 40s ribosomal protein SA B 0.05 Orthogroups_2024-Update
Potri.012G117600 No alias 40s ribosomal protein SA B 0.05 Orthogroups_2024-Update
Pp1s173_16V6 No alias 40s ribosomal protein 0.02 Orthogroups_2024-Update
Pp1s48_103V6 No alias 40s ribosomal protein sa 0.02 Orthogroups_2024-Update
Seita.2G389700.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Sobic.002G374900.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Sobic.002G375100.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Solyc03g019780 No alias 40S ribosomal protein SA (AHRD V3.3 *** K4BEV0_SOLLC) 0.03 Orthogroups_2024-Update
Solyc06g072120 No alias 40S ribosomal protein SA (AHRD V3.3 *** K4C8T4_SOLLC) 0.03 Orthogroups_2024-Update
Sopen03g029850 No alias Ribosomal protein S2 0.03 Orthogroups_2024-Update
Sopen06g028410 No alias Ribosomal protein S2 0.04 Orthogroups_2024-Update
evm.model.contig_4456.25 No alias (o22518|rssa_soybn : 282.0) 40S ribosomal protein SA... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004055 argininosuccinate synthase activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006525 arginine metabolic process IEP Predicted GO
BP GO:0006526 arginine biosynthetic process IEP Predicted GO
BP GO:0006547 histidine metabolic process IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
BP GO:0016053 organic acid biosynthetic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0019238 cyclohydrolase activity IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0044283 small molecule biosynthetic process IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
BP GO:0045048 protein insertion into ER membrane IEP Predicted GO
BP GO:0046394 carboxylic acid biosynthetic process IEP Predicted GO
BP GO:0051205 protein insertion into membrane IEP Predicted GO
BP GO:0052803 imidazole-containing compound metabolic process IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0071816 tail-anchored membrane protein insertion into ER membrane IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0072657 protein localization to membrane IEP Predicted GO
BP GO:0090150 establishment of protein localization to membrane IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001865 Ribosomal_S2 121 186
IPR001865 Ribosomal_S2 22 116
No external refs found!