Description : F-box family protein (AHRD V3.3 *** AT5G48170.1)
Gene families : OG_42_0002089 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002089_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Solanum release: Solyc07g047680 | |
Cluster | HCCA clusters: Cluster_177 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Sobic.004G192400.2 | No alias | substrate adaptor of SCF E3 ubiquitin ligase *(SLY) | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005515 | protein binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003682 | chromatin binding | IEP | Predicted GO |
MF | GO:0003905 | alkylbase DNA N-glycosylase activity | IEP | Predicted GO |
MF | GO:0004017 | adenylate kinase activity | IEP | Predicted GO |
BP | GO:0006284 | base-excision repair | IEP | Predicted GO |
BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
BP | GO:0006396 | RNA processing | IEP | Predicted GO |
BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
BP | GO:0006891 | intra-Golgi vesicle-mediated transport | IEP | Predicted GO |
MF | GO:0008641 | ubiquitin-like modifier activating enzyme activity | IEP | Predicted GO |
MF | GO:0008725 | DNA-3-methyladenine glycosylase activity | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
MF | GO:0016776 | phosphotransferase activity, phosphate group as acceptor | IEP | Predicted GO |
MF | GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds | IEP | Predicted GO |
MF | GO:0016874 | ligase activity | IEP | Predicted GO |
MF | GO:0016877 | ligase activity, forming carbon-sulfur bonds | IEP | Predicted GO |
MF | GO:0016881 | acid-amino acid ligase activity | IEP | Predicted GO |
CC | GO:0017119 | Golgi transport complex | IEP | Predicted GO |
MF | GO:0019104 | DNA N-glycosylase activity | IEP | Predicted GO |
MF | GO:0019205 | nucleobase-containing compound kinase activity | IEP | Predicted GO |
CC | GO:0030684 | preribosome | IEP | Predicted GO |
CC | GO:0030688 | preribosome, small subunit precursor | IEP | Predicted GO |
BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
MF | GO:0043733 | DNA-3-methylbase glycosylase activity | IEP | Predicted GO |
CC | GO:0044431 | Golgi apparatus part | IEP | Predicted GO |
BP | GO:0045116 | protein neddylation | IEP | Predicted GO |
BP | GO:0048193 | Golgi vesicle transport | IEP | Predicted GO |
MF | GO:0050145 | nucleoside monophosphate kinase activity | IEP | Predicted GO |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001810 | F-box_dom | 12 | 52 |
No external refs found! |