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  5. LOC_Os03g12860

LOC_Os03g12860


Description : homeobox associated leucine zipper, putative, expressed


Gene families : OG_42_0000184 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g12860
Cluster HCCA clusters: cluster_0033

Target Alias Description ECC score Gene Family Method Actions
A4A49_01064 No alias homeobox-leucine zipper protein hat22 0.03 Orthogroups_2024-Update
A4A49_35452 No alias homeobox-leucine zipper protein hat4 0.03 Orthogroups_2024-Update
At4g16780 No alias Homeobox-leucine zipper protein HAT4... 0.02 Orthogroups_2024-Update
At5g06710 No alias Homeobox-leucine zipper protein HAT14... 0.02 Orthogroups_2024-Update
Bradi1g51257 No alias Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein 0.01 Orthogroups_2024-Update
Bradi3g21480 No alias homeobox from Arabidopsis thaliana 0.03 Orthogroups_2024-Update
Brara.A00117.1 No alias HD-ZIP I/II-type transcription factor 0.03 Orthogroups_2024-Update
Brara.A01857.1 No alias HD-ZIP I/II-type transcription factor 0.04 Orthogroups_2024-Update
Brara.H01735.1 No alias HD-ZIP I/II-type transcription factor 0.04 Orthogroups_2024-Update
GRMZM2G105834 No alias homeobox from Arabidopsis thaliana 0.03 Orthogroups_2024-Update
Glyma.05G062700 No alias homeobox protein 2 0.07 Orthogroups_2024-Update
Glyma.08G148800 No alias homeobox from Arabidopsis thaliana 0.02 Orthogroups_2024-Update
Glyma.09G062400 No alias homeobox from Arabidopsis thaliana 0.02 Orthogroups_2024-Update
Glyma.17G056300 No alias homeobox from Arabidopsis thaliana 0.03 Orthogroups_2024-Update
HORVU4Hr1G065900.5 No alias HD-ZIP I/II-type transcription factor 0.03 Orthogroups_2024-Update
PSME_00028375-RA No alias (at5g06710 : 210.0) Homeobox-leucine zipper protein.;... 0.02 Orthogroups_2024-Update
PSME_00038042-RA No alias (at5g06710 : 121.0) Homeobox-leucine zipper protein.;... 0.04 Orthogroups_2024-Update
PSME_00039873-RA No alias (at5g06710 : 208.0) Homeobox-leucine zipper protein.;... 0.03 Orthogroups_2024-Update
Potri.001G229700 No alias homeobox from Arabidopsis thaliana 0.03 Orthogroups_2024-Update
Potri.002G113400 No alias Homeobox-leucine zipper protein family 0.04 Orthogroups_2024-Update
Potri.007G008200 No alias Homeobox-leucine zipper protein family 0.03 Orthogroups_2024-Update
Pp1s41_32V6 No alias homeobox-leucine zipper protein 0.02 Orthogroups_2024-Update
Seita.9G321500.1 No alias HD-ZIP I/II-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.001G297200.1 No alias HD-ZIP I/II-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.004G185200.1 No alias HD-ZIP I/II-type transcription factor 0.01 Orthogroups_2024-Update
Solyc02g091930 No alias Homeobox-leucine zipper protein family (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Sopen08g026800 No alias HD-ZIP protein N terminus 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
MF GO:0043565 sequence-specific DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0004556 alpha-amylase activity IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
MF GO:0005102 signaling receptor binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006535 cysteine biosynthetic process from serine IEP Predicted GO
BP GO:0006563 L-serine metabolic process IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
MF GO:0008083 growth factor activity IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
BP GO:0008283 cell proliferation IEP Predicted GO
MF GO:0008373 sialyltransferase activity IEP Predicted GO
MF GO:0009001 serine O-acetyltransferase activity IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009070 serine family amino acid biosynthetic process IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
BP GO:0016053 organic acid biosynthetic process IEP Predicted GO
BP GO:0016125 sterol metabolic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016412 serine O-acyltransferase activity IEP Predicted GO
MF GO:0016413 O-acetyltransferase activity IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016863 intramolecular oxidoreductase activity, transposing C=C bonds IEP Predicted GO
BP GO:0019344 cysteine biosynthetic process IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
MF GO:0030545 receptor regulator activity IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0046394 carboxylic acid biosynthetic process IEP Predicted GO
MF GO:0047750 cholestenol delta-isomerase activity IEP Predicted GO
MF GO:0048018 receptor ligand activity IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
BP GO:1901615 organic hydroxy compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003106 Leu_zip_homeo 182 216
IPR001356 Homeobox_dom 126 180
No external refs found!