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  5. LOC_Os03g15730

LOC_Os03g15730


Description : S-RNase-binding protein, putative, expressed


Gene families : OG_42_0000224 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000224_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g15730
Cluster HCCA clusters: cluster_0034

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G391269 No alias S-ribonuclease binding protein 1 0.02 Orthogroups_2024-Update
Glyma.09G019900 No alias SBP (S-ribonuclease binding protein) family protein 0.02 Orthogroups_2024-Update
Glyma.14G083900 No alias S-ribonuclease binding protein 1 0.02 Orthogroups_2024-Update
HORVU4Hr1G003180.3 No alias E3 ubiquitin ligase *(BRG) 0.02 Orthogroups_2024-Update
Kfl00226_0120 kfl00226_0120_v1.1 no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
PSME_00040898-RA No alias (at1g10650 : 137.0) SBP (S-ribonuclease binding protein)... 0.02 Orthogroups_2024-Update
PSME_00048517-RA No alias (at1g10650 : 181.0) SBP (S-ribonuclease binding protein)... 0.02 Orthogroups_2024-Update
Sobic.004G161400.2 No alias Unknown function 0.01 Orthogroups_2024-Update
Sopen03g031940 No alias Zinc finger, C3HC4 type (RING finger) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004832 valine-tRNA ligase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006438 valyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
BP GO:0016042 lipid catabolic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
BP GO:0043545 molybdopterin cofactor metabolic process IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0051189 prosthetic group metabolic process IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!