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LOC_Os03g20340


Description : SNF1-related protein kinase regulatory subunit beta-1, putative, expressed


Gene families : OG_42_0001630 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001630_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g20340
Cluster HCCA clusters: cluster_0058

Target Alias Description ECC score Gene Family Method Actions
Brara.B00935.1 No alias regulatory subunit beta of SnRK1 kinase complex &... 0.03 Orthogroups_2024-Update
Brara.J01513.1 No alias regulatory subunit beta of SnRK1 kinase complex &... 0.03 Orthogroups_2024-Update
Glyma.14G040700 No alias 5\'-AMP-activated protein kinase beta-2 subunit protein 0.04 Orthogroups_2024-Update
Kfl00574_0020 kfl00574_0020_v1.1 (at4g16360 : 295.0) 5'-AMP-activated protein kinase... 0.02 Orthogroups_2024-Update
Potri.001G220800 No alias 5\'-AMP-activated protein kinase beta-2 subunit protein 0.03 Orthogroups_2024-Update
Sopen11g007450 No alias 5'-AMP-activated protein kinase beta subunit, interation domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004832 valine-tRNA ligase activity IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006438 valyl-tRNA aminoacylation IEP Predicted GO
BP GO:0016042 lipid catabolic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
InterPro domains Description Start Stop
IPR032640 AMPK1_CBM 112 191
IPR006828 ASC_dom 225 292
No external refs found!