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  5. LOC_Os03g22830

LOC_Os03g22830


Description : zinc finger, C3HC4 type domain containing protein, expressed


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g22830
Cluster HCCA clusters: cluster_0073

Target Alias Description ECC score Gene Family Method Actions
A4A49_21563 No alias e3 ubiquitin-protein ligase ring1 0.02 Orthogroups_2024-Update
A4A49_41691 No alias e3 ubiquitin-protein ligase sdir1 0.02 Orthogroups_2024-Update
At3g19950 No alias RING/U-box superfamily protein... 0.02 Orthogroups_2024-Update
At5g64920 No alias CIP8 [Source:UniProtKB/TrEMBL;Acc:A0A178UJC6] 0.02 Orthogroups_2024-Update
Brara.G02768.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.I03890.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Glyma.06G272400 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.10G285300 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.15G047300 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.20G149700 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
HORVU1Hr1G043220.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
LOC_Os11g04281 No alias zinc finger, C3HC4 type domain containing protein 0.02 Orthogroups_2024-Update
Mp7g04520.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update
PSME_00002061-RA No alias (at3g19950 : 146.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
PSME_00056956-RA No alias (at2g40830 : 186.0) Encodes a putative RING-H2 finger... 0.04 Orthogroups_2024-Update
Potri.006G032100 No alias RING-H2 finger C1A 0.05 Orthogroups_2024-Update
Potri.016G029300 No alias RING-H2 finger C1A 0.03 Orthogroups_2024-Update
Seita.5G351000.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.6G176300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G371300.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Sobic.010G199100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen04g004300 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen09g029310 No alias Ring finger domain 0.02 Orthogroups_2024-Update
evm.model.contig_2210.2 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
evm.model.contig_2287.2 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004357 glutamate-cysteine ligase activity IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
MF GO:0019825 oxygen binding IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 186 228
IPR039525 RNF126-like_zinc-ribbon 6 37
No external refs found!