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  5. Solyc07g054460

Solyc07g054460


Description : H/ACA ribonucleoprotein complex non-core subunit NAF1 (AHRD V3.3 *-* W9R7R8_9ROSA)


Gene families : OG_42_0004512 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004512_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g054460
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
412557 No alias nuclear assembly factor 1 0.02 Orthogroups_2024-Update
Brara.J00189.1 No alias non-core component *(NAF1) of H/ACA snoRNP RNA... 0.08 Orthogroups_2024-Update
GRMZM2G015100 No alias nuclear assembly factor 1 0.03 Orthogroups_2024-Update
Glyma.06G297000 No alias nuclear assembly factor 1 0.05 Orthogroups_2024-Update
HORVU1Hr1G065830.1 No alias non-core component *(NAF1) of H/ACA snoRNP RNA... 0.03 Orthogroups_2024-Update
HORVU6Hr1G056850.1 No alias non-core component *(NAF1) of H/ACA snoRNP RNA... 0.05 Orthogroups_2024-Update
Potri.013G145301 No alias nuclear assembly factor 1 0.05 Orthogroups_2024-Update
Potri.019G104400 No alias nuclear assembly factor 1 0.05 Orthogroups_2024-Update
Seita.3G187700.1 No alias non-core component *(NAF1) of H/ACA snoRNP RNA... 0.09 Orthogroups_2024-Update
Sobic.009G189100.1 No alias non-core component *(NAF1) of H/ACA snoRNP RNA... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA InterProScan predictions
BP GO:0042254 ribosome biogenesis IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
InterPro domains Description Start Stop
IPR007504 H/ACA_rnp_Gar1/Naf1 290 433
No external refs found!