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  5. Solyc07g054480

Solyc07g054480


Description : Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A118JXH0_CYNCS)


Gene families : OG_42_0002876 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002876_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g054480
Cluster HCCA clusters: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
77736 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s53_250V6 No alias No description available 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
MF GO:0050290 sphingomyelin phosphodiesterase D activity IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 718 744
IPR002885 Pentatricopeptide_repeat 682 707
IPR002885 Pentatricopeptide_repeat 506 526
IPR002885 Pentatricopeptide_repeat 908 967
IPR002885 Pentatricopeptide_repeat 174 225
IPR002885 Pentatricopeptide_repeat 745 793
IPR002885 Pentatricopeptide_repeat 329 371
IPR002885 Pentatricopeptide_repeat 401 446
IPR033443 PPR_long 555 661
No external refs found!