1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc07g054630

Solyc07g054630


Description : B3 domain-containing transcription factor VRN1 (AHRD V3.3 *** A0A0B0PU79_GOSAR)


Gene families : OG_42_0000768 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000768_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g054630
Cluster HCCA clusters: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
413242 No alias VERDANDI 0.02 Orthogroups_2024-Update
At1g49480 No alias B3 domain-containing protein REM19... 0.03 Orthogroups_2024-Update
Glyma.20G107900 No alias AP2/B3-like transcriptional factor family protein 0.03 Orthogroups_2024-Update
Glyma.20G108000 No alias AP2/B3-like transcriptional factor family protein 0.03 Orthogroups_2024-Update
PSME_00002824-RA No alias (at3g18990 : 90.5) Required for vernalization. Essential... 0.02 Orthogroups_2024-Update
Potri.006G064100 No alias AP2/B3-like transcriptional factor family protein 0.03 Orthogroups_2024-Update
Potri.018G124500 No alias AP2/B3-like transcriptional factor family protein 0.03 Orthogroups_2024-Update
Solyc02g065310 No alias LOW QUALITY:B3 domain-containing protein (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Solyc03g043580 No alias B3 domain-containing transcription factor VRN1 (AHRD... 0.02 Orthogroups_2024-Update
Sopen01g017870 No alias hypothetical protein 0.04 Orthogroups_2024-Update
Sopen02g015460 No alias B3 DNA binding domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003713 transcription coactivator activity IEP Predicted GO
MF GO:0005199 structural constituent of cell wall IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0008272 sulfate transport IEP Predicted GO
BP GO:0009664 plant-type cell wall organization IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0015116 sulfate transmembrane transporter activity IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Predicted GO
BP GO:0072348 sulfur compound transport IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 596 681
IPR003340 B3_DNA-bd 321 407
IPR003340 B3_DNA-bd 45 133
No external refs found!