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  5. LOC_Os03g58840

LOC_Os03g58840


Description : vesicle-associated membrane protein, putative, expressed


Gene families : OG_42_0000264 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000264_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g58840
Cluster HCCA clusters: cluster_0106

Target Alias Description ECC score Gene Family Method Actions
Brara.E01080.1 No alias R-type component *(VAMP721/VAMP722) of SNARE cell-plate... 0.02 Orthogroups_2024-Update
Brara.H01322.1 No alias R-type VAMP7-group component of SNARE longin membrane... 0.02 Orthogroups_2024-Update
Glyma.15G126200 No alias vesicle-associated membrane protein 726 0.02 Orthogroups_2024-Update
Glyma.17G025800 No alias vesicle-associated membrane protein 724 0.02 Orthogroups_2024-Update
Glyma.20G076200 No alias vesicle-associated membrane protein 726 0.02 Orthogroups_2024-Update
Kfl00515_0100 kfl00515_0100_v1.1 (at2g32670 : 271.0) member of Synaptobrevin -like... 0.02 Orthogroups_2024-Update
Pp1s391_60V6 No alias vesicle-associated membrane 0.03 Orthogroups_2024-Update
Sobic.008G191600.1 No alias R-type component *(VAMP721/VAMP722) of SNARE cell-plate... 0.03 Orthogroups_2024-Update
Sobic.010G058500.2 No alias R-type VAMP7-group component of SNARE longin membrane... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA InterProScan predictions
BP GO:0016192 vesicle-mediated transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
MF GO:0016151 nickel cation binding IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
InterPro domains Description Start Stop
IPR010908 Longin_dom 32 111
IPR001388 Synaptobrevin 129 215
No external refs found!