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  5. LOC_Os04g06770

LOC_Os04g06770


Description : argonaute, putative, expressed


Gene families : OG_42_0000134 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000134_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os04g06770
Cluster HCCA clusters: cluster_0054

Target Alias Description ECC score Gene Family Method Actions
Bradi1g54977 No alias Argonaute family protein 0.04 Orthogroups_2024-Update
Bradi3g60697 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.03 Orthogroups_2024-Update
Brara.C01682.1 No alias siRNA-integrating factor *(AGO) 0.02 Orthogroups_2024-Update
Glyma.11G190900 No alias Argonaute family protein 0.02 Orthogroups_2024-Update
Glyma.14G041100 No alias Argonaute family protein 0.03 Orthogroups_2024-Update
Glyma.15G126700 No alias Argonaute family protein 0.02 Orthogroups_2024-Update
Mp1g18110.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 Orthogroups_2024-Update
Pp1s19_179V6 No alias argonaute protein group 0.02 Orthogroups_2024-Update
Seita.2G310800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G053700.2 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Predicted GO
BP GO:0000077 DNA damage checkpoint IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0031570 DNA integrity checkpoint IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003165 Piwi 566 872
IPR032473 Argonaute_Mid_dom 476 557
IPR014811 ArgoL1 229 277
IPR032472 ArgoL2 422 467
IPR003100 PAZ_dom 283 412
IPR032474 Argonaute_N 56 217
No external refs found!