- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : notabilis
Gene families : OG_42_0000424 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000424_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Solanum release: Solyc07g056570 | |
| Cluster | HCCA clusters: Cluster_285 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_16982 | No alias | 9-cis-epoxycarotenoid dioxygenase nced1, chloroplastic | 0.03 | Orthogroups_2024-Update | |
| At4g18350 | No alias | 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic... | 0.03 | Orthogroups_2024-Update | |
| At4g19170 | No alias | Probable carotenoid cleavage dioxygenase 4,... | 0.03 | Orthogroups_2024-Update | |
| Brara.A01020.1 | No alias | carotenoid cleavage dioxygenase *(CCD4) & EC_1.13... | 0.05 | Orthogroups_2024-Update | |
| Brara.A03189.1 | No alias | EC_1.13 oxidoreductase acting on single donor with... | 0.04 | Orthogroups_2024-Update | |
| Brara.I04483.1 | No alias | carotenoid cleavage dioxygenase *(CCD1) & EC_1.13... | 0.03 | Orthogroups_2024-Update | |
| Brara.I04484.1 | No alias | carotenoid cleavage dioxygenase *(CCD1) & EC_1.13... | 0.04 | Orthogroups_2024-Update | |
| Glyma.01G154900 | No alias | nine-cis-epoxycarotenoid dioxygenase 4 | 0.04 | Orthogroups_2024-Update | |
| HORVU5Hr1G000320.2 | No alias | carotenoid cleavage dioxygenase *(CCD1) & EC_1.13... | 0.02 | Orthogroups_2024-Update | |
| HORVU5Hr1G008050.1 | No alias | EC_1.13 oxidoreductase acting on single donor with... | 0.02 | Orthogroups_2024-Update | |
| HORVU5Hr1G054970.1 | No alias | EC_1.13 oxidoreductase acting on single donor with... | 0.03 | Orthogroups_2024-Update | |
| HORVU6Hr1G068720.4 | No alias | carotenoid cleavage dioxygenase *(CCD4) & EC_1.13... | 0.03 | Orthogroups_2024-Update | |
| MA_10425950g0010 | No alias | (at4g19170 : 581.0) chloroplast-targeted member of a... | 0.04 | Orthogroups_2024-Update | |
| MA_10434448g0010 | No alias | (at3g14440 : 592.0) Encodes ... | 0.05 | Orthogroups_2024-Update | |
| Potri.001G265900 | No alias | carotenoid cleavage dioxygenase 1 | 0.02 | Orthogroups_2024-Update | |
| Potri.011G112400 | No alias | nine-cis-epoxycarotenoid dioxygenase 3 | 0.03 | Orthogroups_2024-Update | |
| Potri.019G093400 | No alias | nine-cis-epoxycarotenoid dioxygenase 4 | 0.03 | Orthogroups_2024-Update | |
| Pp1s118_231V6 | No alias | MAA21.150; 9-cis-epoxycarotenoid dioxygenase /... | 0.02 | Orthogroups_2024-Update | |
| Seita.1G288400.1 | No alias | carotenoid cleavage dioxygenase *(CCD4) & EC_1.13... | 0.02 | Orthogroups_2024-Update | |
| Seita.3G391000.1 | No alias | EC_1.13 oxidoreductase acting on single donor with... | 0.03 | Orthogroups_2024-Update | |
| Seita.3G408300.1 | No alias | carotenoid cleavage dioxygenase *(CCD1) & EC_1.13... | 0.03 | Orthogroups_2024-Update | |
| Sobic.001G155300.1 | No alias | EC_1.13 oxidoreductase acting on single donor with... | 0.02 | Orthogroups_2024-Update | |
| Sopen07g029920 | No alias | Retinal pigment epithelial membrane protein | 0.08 | Orthogroups_2024-Update | |
| Sopen08g024140 | No alias | Retinal pigment epithelial membrane protein | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | IEA | InterProScan predictions |
| BP | GO:0055114 | oxidation-reduction process | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003950 | NAD+ ADP-ribosyltransferase activity | IEP | Predicted GO |
| MF | GO:0004252 | serine-type endopeptidase activity | IEP | Predicted GO |
| BP | GO:0006643 | membrane lipid metabolic process | IEP | Predicted GO |
| BP | GO:0006664 | glycolipid metabolic process | IEP | Predicted GO |
| BP | GO:0009247 | glycolipid biosynthetic process | IEP | Predicted GO |
| MF | GO:0016597 | amino acid binding | IEP | Predicted GO |
| MF | GO:0016763 | transferase activity, transferring pentosyl groups | IEP | Predicted GO |
| MF | GO:0031406 | carboxylic acid binding | IEP | Predicted GO |
| MF | GO:0043177 | organic acid binding | IEP | Predicted GO |
| BP | GO:0046467 | membrane lipid biosynthetic process | IEP | Predicted GO |
| MF | GO:0051087 | chaperone binding | IEP | Predicted GO |
| BP | GO:1903509 | liposaccharide metabolic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR004294 | Carotenoid_Oase | 134 | 596 |
| No external refs found! |