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  5. LOC_Os04g42370

LOC_Os04g42370


Description : expressed protein


Gene families : OG_42_0004501 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004501_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os04g42370
Cluster HCCA clusters: cluster_0131

Target Alias Description ECC score Gene Family Method Actions
HORVU2Hr1G086840.1 No alias component *(TRS120/VAN4) of TRAPP-II complex-specific components 0.06 Orthogroups_2024-Update
Pp1s174_67V6 No alias nik and ikkbinding protein isoform 2 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
InterPro domains Description Start Stop
IPR013935 TRAPP_II_complex_Trs120 199 267
IPR013935 TRAPP_II_complex_Trs120 333 716
IPR013935 TRAPP_II_complex_Trs120 811 1132
IPR013935 TRAPP_II_complex_Trs120 10 195
No external refs found!