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  5. Solyc07g064520

Solyc07g064520


Description : RNA helicase DEAD24


Gene families : OG_42_0000879 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000879_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g064520
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
62176 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
At3g18600 No alias DEAD-box ATP-dependent RNA helicase 51... 0.03 Orthogroups_2024-Update
At5g54910 No alias DEAD-box ATP-dependent RNA helicase 32... 0.05 Orthogroups_2024-Update
Bradi4g41160 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Orthogroups_2024-Update
Brara.A02921.1 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway 0.05 Orthogroups_2024-Update
Brara.C03695.1 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway 0.04 Orthogroups_2024-Update
Brara.E02336.1 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway 0.06 Orthogroups_2024-Update
Brara.F02458.1 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway 0.04 Orthogroups_2024-Update
Cre03.g156150 No alias DEA(D/H)-box RNA helicase family protein 0.07 Orthogroups_2024-Update
Cre07.g314900 No alias P-loop containing nucleoside triphosphate hydrolases... 0.08 Orthogroups_2024-Update
GRMZM5G897976 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
Potri.001G250700 No alias P-loop containing nucleoside triphosphate hydrolases... 0.06 Orthogroups_2024-Update
Potri.009G045300 No alias P-loop containing nucleoside triphosphate hydrolases... 0.07 Orthogroups_2024-Update
Pp1s59_317V6 No alias rna helicase 0.03 Orthogroups_2024-Update
Seita.2G332500.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.001G051500.1 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway 0.11 Orthogroups_2024-Update
Sobic.002G318800.1 No alias Unknown function 0.08 Orthogroups_2024-Update
Sopen03g033470 No alias DEAD/DEAH box helicase 0.1 Orthogroups_2024-Update
evm.model.contig_3451.10 No alias (at3g18600 : 515.0) P-loop containing nucleoside... 0.04 Orthogroups_2024-Update
evm.model.tig00000441.11 No alias (at3g18600 : 300.0) P-loop containing nucleoside... 0.04 Orthogroups_2024-Update
evm.model.tig00000441.12 No alias (at5g65900 : 171.0) DEA(D/H)-box RNA helicase family... 0.04 Orthogroups_2024-Update
evm.model.tig00020604.24 No alias (at5g54910 : 437.0) DEA(D/H)-box RNA helicase family... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 92 263
IPR001650 Helicase_C 300 409
IPR025313 DUF4217 454 510
No external refs found!