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  5. LOC_Os04g50030

LOC_Os04g50030


Description : DNA binding protein, putative, expressed


Gene families : OG_42_0000350 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000350_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os04g50030
Cluster HCCA clusters: cluster_0101

Target Alias Description ECC score Gene Family Method Actions
A4A49_17278 No alias at-hook motif nuclear-localized protein 20 0.03 Orthogroups_2024-Update
Potri.001G115200 No alias Predicted AT-hook DNA-binding family protein 0.02 Orthogroups_2024-Update
Solyc04g082810 No alias AT hook motif DNA-binding family protein (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Sopen01g037230 No alias Domain of unknown function (DUF296) 0.02 Orthogroups_2024-Update
Sopen08g025590 No alias Domain of unknown function (DUF296) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0007275 multicellular organism development IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
BP GO:0032501 multicellular organismal process IEP Predicted GO
BP GO:0032502 developmental process IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
BP GO:0048856 anatomical structure development IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR005175 PPC_dom 110 223
No external refs found!