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  5. LOC_Os04g50990

LOC_Os04g50990


Description : L11 domain containing ribosomal protein, putative, expressed


Gene families : OG_42_0001717 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001717_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os04g50990
Cluster HCCA clusters: cluster_0084

Target Alias Description ECC score Gene Family Method Actions
227409 No alias Ribosomal protein L11 family protein 0.04 Orthogroups_2024-Update
A4A49_09340 No alias 60s ribosomal protein l12 0.03 Orthogroups_2024-Update
A4A49_19100 No alias 60s ribosomal protein l12 0.03 Orthogroups_2024-Update
A4A49_58419 No alias 60s ribosomal protein l12 0.06 Orthogroups_2024-Update
Bradi3g52460 No alias Ribosomal protein L11 family protein 0.03 Orthogroups_2024-Update
Brara.D00531.1 No alias component *(uL11) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Brara.D02258.1 No alias component *(uL11) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Brara.G01587.1 No alias component *(uL11) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Brara.I03633.1 No alias component *(uL11) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Cre12.g528750 No alias Ribosomal protein L11 family protein 0.04 Orthogroups_2024-Update
GRMZM2G054201 No alias Ribosomal protein L11 family protein 0.03 Orthogroups_2024-Update
GRMZM2G121075 No alias Ribosomal protein L11 family protein 0.03 Orthogroups_2024-Update
Glyma.10G053100 No alias Ribosomal protein L11 family protein 0.1 Orthogroups_2024-Update
Glyma.11G146300 No alias Ribosomal protein L11 family protein 0.03 Orthogroups_2024-Update
Glyma.12G075500 No alias Ribosomal protein L11 family protein 0.07 Orthogroups_2024-Update
Glyma.13G140100 No alias Ribosomal protein L11 family protein 0.06 Orthogroups_2024-Update
HORVU2Hr1G102610.1 No alias component *(uL11) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
HORVU6Hr1G067870.1 No alias component *(uL11) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Kfl00125_0170 kfl00125_0170_v1.1 (at2g37190 : 245.0) Ribosomal protein L11 family... 0.04 Orthogroups_2024-Update
MA_10427147g0010 No alias (at5g60670 : 270.0) Ribosomal protein L11 family... 0.02 Orthogroups_2024-Update
Mp3g02020.1 No alias component RPL12 of LSU proteome component 0.02 Orthogroups_2024-Update
Pp1s104_128V6 No alias 60s ribosomal protein l12 0.05 Orthogroups_2024-Update
Pp1s242_7V6 No alias 60s ribosomal protein l12 0.05 Orthogroups_2024-Update
Pp1s280_55V6 No alias 60s ribosomal protein l12 0.02 Orthogroups_2024-Update
Pp1s78_212V6 No alias 60s ribosomal protein l12 0.08 Orthogroups_2024-Update
Seita.1G284700.1 No alias component *(uL11) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Seita.7G078800.1 No alias component *(uL11) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Seita.7G222200.1 No alias component *(uL11) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Sobic.004G271400.1 No alias component *(uL11) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Sobic.006G057200.1 No alias component *(uL11) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Sobic.006G201500.1 No alias component *(uL11) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Solyc06g075180 No alias 60S ribosomal protein L12 (AHRD V3.3 *** K7WTX4_SOLTU) 0.04 Orthogroups_2024-Update
Solyc11g065670 No alias 60S ribosomal protein L12 (AHRD V3.3 *** Q6RJY1_CAPAN) 0.03 Orthogroups_2024-Update
Sopen06g031590 No alias Ribosomal protein L11, N-terminal domain 0.03 Orthogroups_2024-Update
Sopen11g025410 No alias Ribosomal protein L11, N-terminal domain 0.04 Orthogroups_2024-Update
Sopen11g028160 No alias Ribosomal protein L11, N-terminal domain 0.02 Orthogroups_2024-Update
evm.model.contig_2343.1 No alias (at5g60670 : 215.0) Ribosomal protein L11 family... 0.08 Orthogroups_2024-Update
evm.model.tig00001339.27 No alias (at5g60670 : 218.0) Ribosomal protein L11 family... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004061 arylformamidase activity IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Predicted GO
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0004629 phospholipase C activity IEP Predicted GO
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005739 mitochondrion IEP Predicted GO
CC GO:0005787 signal peptidase complex IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006448 regulation of translational elongation IEP Predicted GO
BP GO:0006449 regulation of translational termination IEP Predicted GO
BP GO:0006452 translational frameshifting IEP Predicted GO
BP GO:0006465 signal peptide processing IEP Predicted GO
BP GO:0006568 tryptophan metabolic process IEP Predicted GO
BP GO:0006569 tryptophan catabolic process IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006586 indolalkylamine metabolic process IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0009063 cellular amino acid catabolic process IEP Predicted GO
BP GO:0009074 aromatic amino acid family catabolic process IEP Predicted GO
BP GO:0009310 amine catabolic process IEP Predicted GO
BP GO:0009891 positive regulation of biosynthetic process IEP Predicted GO
BP GO:0009893 positive regulation of metabolic process IEP Predicted GO
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010628 positive regulation of gene expression IEP Predicted GO
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Predicted GO
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Predicted GO
BP GO:0015931 nucleobase-containing compound transport IEP Predicted GO
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Predicted GO
BP GO:0016054 organic acid catabolic process IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
BP GO:0019441 tryptophan catabolic process to kynurenine IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
BP GO:0031325 positive regulation of cellular metabolic process IEP Predicted GO
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Predicted GO
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Predicted GO
BP GO:0042180 cellular ketone metabolic process IEP Predicted GO
BP GO:0042402 cellular biogenic amine catabolic process IEP Predicted GO
BP GO:0042430 indole-containing compound metabolic process IEP Predicted GO
BP GO:0042436 indole-containing compound catabolic process IEP Predicted GO
BP GO:0042537 benzene-containing compound metabolic process IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
BP GO:0043243 positive regulation of protein complex disassembly IEP Predicted GO
BP GO:0043244 regulation of protein complex disassembly IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044282 small molecule catabolic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0045727 positive regulation of translation IEP Predicted GO
BP GO:0045901 positive regulation of translational elongation IEP Predicted GO
BP GO:0045905 positive regulation of translational termination IEP Predicted GO
BP GO:0046218 indolalkylamine catabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
BP GO:0046395 carboxylic acid catabolic process IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
BP GO:0048518 positive regulation of biological process IEP Predicted GO
BP GO:0048522 positive regulation of cellular process IEP Predicted GO
BP GO:0051128 regulation of cellular component organization IEP Predicted GO
BP GO:0051130 positive regulation of cellular component organization IEP Predicted GO
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051247 positive regulation of protein metabolic process IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
BP GO:0070189 kynurenine metabolic process IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
BP GO:1901264 carbohydrate derivative transport IEP Predicted GO
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
BP GO:1901606 alpha-amino acid catabolic process IEP Predicted GO
CC GO:1905368 peptidase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR020784 Ribosomal_L11_N 13 70
IPR020783 Ribosomal_L11_C 75 144
No external refs found!