LOC_Os04g53680

Description : cyclin, putative, expressed

Gene families : OG_42_0000447 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000447_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os04g53680
Cluster	HCCA clusters: cluster_0006

Target	Alias	Description	ECC score	Gene Family Method
At3g21870	No alias	Cyclin-U1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJ45]	0.03	Orthogroups_2024-Update
At3g60550	No alias	Cyclin-U2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M205]	0.03	Orthogroups_2024-Update
Bradi3g33590	No alias	cyclin p4;1	0.03	Orthogroups_2024-Update
Brara.C02277.1	No alias	regulatory protein *(CYCP(CYCU) of cell cycle	0.03	Orthogroups_2024-Update
Brara.E02035.1	No alias	regulatory protein *(CYCP(CYCU) of cell cycle	0.03	Orthogroups_2024-Update
GRMZM2G132774	No alias	cyclin p3;1	0.02	Orthogroups_2024-Update
GRMZM2G148621	No alias	cyclin p2;1	0.02	Orthogroups_2024-Update
Glyma.13G306600	No alias	cyclin p2;1	0.03	Orthogroups_2024-Update
HORVU2Hr1G093210.7	No alias	regulatory protein *(CYCP(CYCU) of cell cycle	0.03	Orthogroups_2024-Update
HORVU6Hr1G014420.2	No alias	regulatory protein *(CYCP(CYCU) of cell cycle	0.02	Orthogroups_2024-Update
MA_10430367g0020	No alias	(at3g21870 : 208.0) cyclin p2;1 (CYCP2;1); CONTAINS...	0.05	Orthogroups_2024-Update
MA_80306g0010	No alias	(at2g44740 : 154.0) cyclin p4;1 (CYCP4;1); CONTAINS...	0.03	Orthogroups_2024-Update
PSME_00015828-RA	No alias	(at2g44740 : 200.0) cyclin p4;1 (CYCP4;1); CONTAINS...	0.03	Orthogroups_2024-Update
PSME_00020995-RA	No alias	(at3g60550 : 228.0) cyclin p3;2 (CYCP3;2); CONTAINS...	0.01	Orthogroups_2024-Update
PSME_00022193-RA	No alias	(at3g60550 : 201.0) cyclin p3;2 (CYCP3;2); CONTAINS...	0.02	Orthogroups_2024-Update
Pp1s387_48V6	No alias	MEK6.1; cyclin family protein [Arabidopsis thaliana]	0.03	Orthogroups_2024-Update
Pp1s8_315V6	No alias	MEK6.1; cyclin family protein [Arabidopsis thaliana]	0.01	Orthogroups_2024-Update
Seita.2G158200.1	No alias	regulatory protein *(CYCP(CYCU) of cell cycle	0.03	Orthogroups_2024-Update
Seita.7G247700.1	No alias	regulatory protein *(CYCP(CYCU) of cell cycle	0.03	Orthogroups_2024-Update
Solyc07g052610	No alias	cyclinU1_1	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	IEA	InterProScan predictions
BP	GO:0001932	regulation of protein phosphorylation	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0019220	regulation of phosphate metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
MF	GO:0019900	kinase binding	None	Extended
MF	GO:0019901	protein kinase binding	IEA	InterProScan predictions
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0032268	regulation of cellular protein metabolic process	None	Extended
BP	GO:0042325	regulation of phosphorylation	None	Extended
BP	GO:0043549	regulation of kinase activity	None	Extended
BP	GO:0045859	regulation of protein kinase activity	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050790	regulation of catalytic activity	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051174	regulation of phosphorus metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051338	regulation of transferase activity	None	Extended
BP	GO:0051726	regulation of cell cycle	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
BP	GO:0071900	regulation of protein serine/threonine kinase activity	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1904029	regulation of cyclin-dependent protein kinase activity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000272	polysaccharide catabolic process	IEP	Predicted GO
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Predicted GO
MF	GO:0003872	6-phosphofructokinase activity	IEP	Predicted GO
BP	GO:0008064	regulation of actin polymerization or depolymerization	IEP	Predicted GO
MF	GO:0008236	serine-type peptidase activity	IEP	Predicted GO
CC	GO:0008290	F-actin capping protein complex	IEP	Predicted GO
MF	GO:0008443	phosphofructokinase activity	IEP	Predicted GO
MF	GO:0008483	transaminase activity	IEP	Predicted GO
BP	GO:0009056	catabolic process	IEP	Predicted GO
BP	GO:0010639	negative regulation of organelle organization	IEP	Predicted GO
BP	GO:0016052	carbohydrate catabolic process	IEP	Predicted GO
MF	GO:0016160	amylase activity	IEP	Predicted GO
MF	GO:0016161	beta-amylase activity	IEP	Predicted GO
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	Predicted GO
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Predicted GO
MF	GO:0017171	serine hydrolase activity	IEP	Predicted GO
MF	GO:0019200	carbohydrate kinase activity	IEP	Predicted GO
BP	GO:0030832	regulation of actin filament length	IEP	Predicted GO
BP	GO:0030833	regulation of actin filament polymerization	IEP	Predicted GO
BP	GO:0030834	regulation of actin filament depolymerization	IEP	Predicted GO
BP	GO:0030835	negative regulation of actin filament depolymerization	IEP	Predicted GO
BP	GO:0030837	negative regulation of actin filament polymerization	IEP	Predicted GO
BP	GO:0031333	negative regulation of protein complex assembly	IEP	Predicted GO
BP	GO:0032271	regulation of protein polymerization	IEP	Predicted GO
BP	GO:0032272	negative regulation of protein polymerization	IEP	Predicted GO
BP	GO:0032535	regulation of cellular component size	IEP	Predicted GO
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	Predicted GO
BP	GO:0032956	regulation of actin cytoskeleton organization	IEP	Predicted GO
BP	GO:0032970	regulation of actin filament-based process	IEP	Predicted GO
BP	GO:0033043	regulation of organelle organization	IEP	Predicted GO
BP	GO:0043242	negative regulation of protein complex disassembly	IEP	Predicted GO
BP	GO:0043244	regulation of protein complex disassembly	IEP	Predicted GO
BP	GO:0043254	regulation of protein complex assembly	IEP	Predicted GO
BP	GO:0044087	regulation of cellular component biogenesis	IEP	Predicted GO
MF	GO:0045300	acyl-[acyl-carrier-protein] desaturase activity	IEP	Predicted GO
BP	GO:0051016	barbed-end actin filament capping	IEP	Predicted GO
BP	GO:0051128	regulation of cellular component organization	IEP	Predicted GO
BP	GO:0051129	negative regulation of cellular component organization	IEP	Predicted GO
BP	GO:0051493	regulation of cytoskeleton organization	IEP	Predicted GO
BP	GO:0051494	negative regulation of cytoskeleton organization	IEP	Predicted GO
BP	GO:0051693	actin filament capping	IEP	Predicted GO
BP	GO:0090066	regulation of anatomical structure size	IEP	Predicted GO
BP	GO:0110053	regulation of actin filament organization	IEP	Predicted GO
MF	GO:0140110	transcription regulator activity	IEP	Predicted GO
BP	GO:1901575	organic substance catabolic process	IEP	Predicted GO
BP	GO:1901879	regulation of protein depolymerization	IEP	Predicted GO
BP	GO:1901880	negative regulation of protein depolymerization	IEP	Predicted GO
BP	GO:1902903	regulation of supramolecular fiber organization	IEP	Predicted GO
BP	GO:1902904	negative regulation of supramolecular fiber organization	IEP	Predicted GO
MF	GO:2001070	starch binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR013922	Cyclin_PHO80-like	23	169

External Links

No external refs found!

LOC_Os04g53680

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation