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  5. LOC_Os04g53930

LOC_Os04g53930


Description : organic cation transporter protein, putative, expressed


Gene families : OG_42_0002359 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002359_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os04g53930
Cluster HCCA clusters: cluster_0006

Target Alias Description ECC score Gene Family Method Actions
Glyma.12G216300 No alias organic cation/carnitine transporter4 0.03 Orthogroups_2024-Update
Glyma.13G284900 No alias organic cation/carnitine transporter4 0.02 Orthogroups_2024-Update
HORVU2Hr1G108290.4 No alias organic cation transporter *(OCT) 0.04 Orthogroups_2024-Update
Seita.7G249900.1 No alias organic cation transporter *(OCT) 0.08 Orthogroups_2024-Update
Sobic.006G227900.2 No alias organic cation transporter *(OCT) 0.03 Orthogroups_2024-Update
Solyc07g063920 No alias Organic cation transporter, putative (AHRD V3.3 *** B9SY49_RICCO) 0.03 Orthogroups_2024-Update
Sopen07g032070 No alias Sugar (and other) transporter 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA InterProScan predictions
MF GO:0022857 transmembrane transporter activity IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0003333 amino acid transmembrane transport IEP Predicted GO
MF GO:0004476 mannose-6-phosphate isomerase activity IEP Predicted GO
MF GO:0004779 sulfate adenylyltransferase activity IEP Predicted GO
MF GO:0004781 sulfate adenylyltransferase (ATP) activity IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
BP GO:0006820 anion transport IEP Predicted GO
BP GO:0006865 amino acid transport IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
MF GO:0033897 ribonuclease T2 activity IEP Predicted GO
BP GO:0034220 ion transmembrane transport IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
BP GO:0098656 anion transmembrane transport IEP Predicted GO
BP GO:1903825 organic acid transmembrane transport IEP Predicted GO
BP GO:1905039 carboxylic acid transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR005828 MFS_sugar_transport-like 1 377
No external refs found!