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  5. Solyc01g087050

Solyc01g087050


Description : Protein TRANSPARENT TESTA 1 (AHRD V3.3 *** A0A0B2QDT4_GLYSO)


Gene families : OG_42_0000614 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000614_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g087050
Cluster HCCA clusters: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
At1g13290 No alias Zinc finger protein WIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX68] 0.03 Orthogroups_2024-Update
At3g57670 No alias WIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VLW5] 0.04 Orthogroups_2024-Update
Glyma.01G086800 No alias C2H2-like zinc finger protein 0.02 Orthogroups_2024-Update
Glyma.02G099100 No alias C2H2-like zinc finger protein 0.03 Orthogroups_2024-Update
Glyma.12G057000 No alias WIP domain protein 5 0.05 Orthogroups_2024-Update
Glyma.19G142600 No alias C2H2-type zinc finger family protein 0.03 Orthogroups_2024-Update
LOC_Os06g40960 No alias ZOS6-05 - C2H2 zinc finger protein, expressed 0.02 Orthogroups_2024-Update
MA_29238g0010 No alias (at3g57670 : 349.0) NO TRANSMITTING TRACT (NTT);... 0.03 Orthogroups_2024-Update
PSME_00022766-RA No alias (at1g13290 : 348.0) Encodes a putative zinc finger... 0.03 Orthogroups_2024-Update
PSME_00052029-RA No alias (at3g57670 : 341.0) NO TRANSMITTING TRACT (NTT);... 0.02 Orthogroups_2024-Update
Potri.001G267900 No alias C2H2-type zinc finger family protein 0.04 Orthogroups_2024-Update
Potri.002G098200 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Orthogroups_2024-Update
Potri.016G052700 No alias C2H2-type zinc finger family protein 0.03 Orthogroups_2024-Update
Seita.5G389100.1 No alias C2H2 subclass WIP transcription factor 0.05 Orthogroups_2024-Update
Sobic.003G363200.1 No alias C2H2 subclass WIP transcription factor 0.03 Orthogroups_2024-Update
Solyc05g009770 No alias Protein TRANSPARENT TESTA 1-like protein (AHRD V3.3 ***... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!