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  5. LOC_Os05g37330

LOC_Os05g37330


Description : 60S acidic ribosomal protein, putative, expressed


Gene families : OG_42_0001058 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001058_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os05g37330
Cluster HCCA clusters: cluster_0084

Target Alias Description ECC score Gene Family Method Actions
139397 No alias 60S acidic ribosomal protein family 0.04 Orthogroups_2024-Update
At2g27710 No alias AT2G27710 protein [Source:UniProtKB/TrEMBL;Acc:B9DGN3] 0.04 Orthogroups_2024-Update
At2g27720 No alias 60S acidic ribosomal protein family... 0.03 Orthogroups_2024-Update
Bradi2g23830 No alias 60S acidic ribosomal protein family 0.03 Orthogroups_2024-Update
Bradi5g09212 No alias 60S acidic ribosomal protein family 0.05 Orthogroups_2024-Update
Bradi5g09217 No alias 60S acidic ribosomal protein family 0.04 Orthogroups_2024-Update
Brara.C02416.1 No alias component *(RPP2) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Brara.D01652.1 No alias component *(RPP2) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Brara.G01325.1 No alias component *(RPP2) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Cre02.g143050 No alias 60S acidic ribosomal protein family 0.06 Orthogroups_2024-Update
GRMZM2G075630 No alias 60S acidic ribosomal protein family 0.02 Orthogroups_2024-Update
GRMZM2G119809 No alias 60S acidic ribosomal protein family 0.02 Orthogroups_2024-Update
Glyma.03G193100 No alias 60S acidic ribosomal protein family 0.03 Orthogroups_2024-Update
Glyma.10G067800 No alias 60S acidic ribosomal protein family 0.05 Orthogroups_2024-Update
Glyma.12G182800 No alias 60S acidic ribosomal protein family 0.03 Orthogroups_2024-Update
Glyma.13G318200 No alias 60S acidic ribosomal protein family 0.03 Orthogroups_2024-Update
Glyma.19G193200 No alias 60S acidic ribosomal protein family 0.04 Orthogroups_2024-Update
Glyma.U031221 No alias 60S acidic ribosomal protein family 0.05 Orthogroups_2024-Update
Mp1g06260.1 No alias component RPP2 of LSU proteome component 0.06 Orthogroups_2024-Update
Mp1g08160.1 No alias component RPP2 of LSU proteome component 0.02 Orthogroups_2024-Update
PSME_00022751-RA No alias (o24415|rla2b_maize : 100.0) 60S acidic ribosomal... 0.05 Orthogroups_2024-Update
PSME_00050387-RA No alias (original description: no original description) 0.06 Orthogroups_2024-Update
Potri.004G185800 No alias 60S acidic ribosomal protein family 0.04 Orthogroups_2024-Update
Pp1s14_289V6 No alias 60s acidic ribosomal protein 0.06 Orthogroups_2024-Update
Pp1s21_165V6 No alias 60s acidic ribosomal protein 0.06 Orthogroups_2024-Update
Pp1s30_261V6 No alias 60s acidic ribosomal protein 0.06 Orthogroups_2024-Update
Pp1s409_34V6 No alias 60s acidic ribosomal protein 0.02 Orthogroups_2024-Update
Pp1s51_319V6 No alias 60s acidic ribosomal protein 0.07 Orthogroups_2024-Update
Seita.6G192700.1 No alias component *(RPP2) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Sobic.006G067800.1 No alias component *(RPP2) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Sobic.006G260400.1 No alias component *(RPP2) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Sobic.009G155600.1 No alias component *(RPP2) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Sobic.009G242300.3 No alias component *(RPP2) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Solyc06g074430 No alias 60s acidic ribosomal protein-like protein (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Solyc11g067100 No alias 60s acidic ribosomal family protein (AHRD V3.3 *** A9PCM7_POPTR) 0.05 Orthogroups_2024-Update
Sopen06g030910 No alias 60s Acidic ribosomal protein 0.07 Orthogroups_2024-Update
Sopen11g026810 No alias 60s Acidic ribosomal protein 0.04 Orthogroups_2024-Update
evm.model.contig_2346.3 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
evm.model.contig_3407.5 No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000702 oxidized base lesion DNA N-glycosylase activity IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
MF GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity IEP Predicted GO
MF GO:0004664 prephenate dehydratase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005739 mitochondrion IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006558 L-phenylalanine metabolic process IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
CC GO:0008250 oligosaccharyltransferase complex IEP Predicted GO
MF GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009094 L-phenylalanine biosynthetic process IEP Predicted GO
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030688 preribosome, small subunit precursor IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Predicted GO
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!