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  5. LOC_Os05g38500

LOC_Os05g38500


Description : fasciclin-like arabinogalactan protein, putative, expressed


Gene families : OG_42_0000318 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000318_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os05g38500
Cluster HCCA clusters: cluster_0054

Target Alias Description ECC score Gene Family Method Actions
A4A49_22028 No alias fasciclin-like arabinogalactan protein 2 0.02 Orthogroups_2024-Update
Brara.F01805.1 No alias regulatory factor SOS5 of SOS *(Salt Overly Sensitive)... 0.03 Orthogroups_2024-Update
Brara.J01017.1 No alias Fasciclin-type arabinogalactan protein 0.04 Orthogroups_2024-Update
LOC_Os04g48490 No alias fasciclin-like arabinogalactan protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_10436490g0010 No alias (at2g45470 : 278.0) FASCICLIN-like arabinogalactan... 0.02 Orthogroups_2024-Update
Potri.014G168100 No alias FASCICLIN-like arabinogalactan 2 0.02 Orthogroups_2024-Update
Pp1s130_236V6 No alias Fasciclin-like arabinogalactan protein 8 precursor... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP Predicted GO
CC GO:0000775 chromosome, centromeric region IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0006275 regulation of DNA replication IEP Predicted GO
BP GO:0006383 transcription by RNA polymerase III IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0007049 cell cycle IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
CC GO:0032299 ribonuclease H2 complex IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0051052 regulation of DNA metabolic process IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
CC GO:0098687 chromosomal region IEP Predicted GO
InterPro domains Description Start Stop
IPR000782 FAS1_domain 219 353
No external refs found!