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  5. LOC_Os05g41060

LOC_Os05g41060


Description : ADP-ribosylation factor, putative, expressed


Gene families : OG_42_0000220 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000220_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os05g41060
Cluster HCCA clusters: cluster_0106

Target Alias Description ECC score Gene Family Method Actions
100907 No alias ADP-ribosylation factor B1C 0.01 Orthogroups_2024-Update
Brara.D00063.1 No alias ARF-GTPase *(ARF1) 0.02 Orthogroups_2024-Update
Brara.E00074.1 No alias ARF-GTPase *(ARF1) 0.02 Orthogroups_2024-Update
Glyma.02G035600 No alias ADP-ribosylation factor A1F 0.02 Orthogroups_2024-Update
Glyma.20G094200 No alias ADP-ribosylation factor A1F 0.02 Orthogroups_2024-Update
HORVU1Hr1G068790.1 No alias ARF-GTPase *(ARF1) 0.02 Orthogroups_2024-Update
Kfl00446_0020 kfl00446_0020_v1.... (p51823|arf2_orysa : 357.0) ADP-ribosylation factor 2 -... 0.02 Orthogroups_2024-Update
Potri.009G096900 No alias ADP-ribosylation factor A1F 0.03 Orthogroups_2024-Update
Pp1s67_221V6 No alias adp-ribosylation factor 0.02 Orthogroups_2024-Update
Seita.1G284400.1 No alias ARF-GTPase *(ARFA) 0.02 Orthogroups_2024-Update
Seita.9G040500.1 No alias ARF-GTPase *(ARF1) 0.02 Orthogroups_2024-Update
Seita.9G305400.1 No alias ARF-GTPase *(ARFA) 0.01 Orthogroups_2024-Update
Sobic.003G332401.1 No alias ARF-GTPase *(ARF1) 0.02 Orthogroups_2024-Update
Sobic.004G277800.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g100860 No alias ADP-ribosylation factor (AHRD V3.3 *** ARF_VIGUN) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
MF GO:0016151 nickel cation binding IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR006689 Small_GTPase_ARF/SAR 5 177
No external refs found!