1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc08g008080

Solyc08g008080


Description : RING/U-box superfamily protein (AHRD V3.3 *** AT1G63840.1)


Gene families : OG_42_0000206 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000206_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc08g008080
Cluster HCCA clusters: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
A4A49_59699 No alias e3 ubiquitin-protein ligase rha1b 0.03 Orthogroups_2024-Update
Bradi3g51810 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G071277 No alias brassinosteroid-responsive RING-H2 0.02 Orthogroups_2024-Update
Glyma.01G093800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
HORVU4Hr1G051840.1 No alias Unknown function 0.03 Orthogroups_2024-Update
PSME_00003461-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Sopen07g023740 No alias Ring finger domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0007029 endoplasmic reticulum organization IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0016778 diphosphotransferase activity IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 86 130
No external refs found!